Evidence map›Paper›PMID 25641314›Full record

ArticleProteins2015

Evaluation of conformational changes in diabetes-associated mutation in insulin a chain: a molecular dynamics study.

Yong Hwan Kim, Kevin Kastner, Badi Abdul-Wahid, Jesús A Izaguirre

Open access · greenAbstract read
In one paragraph

Article in Proteins, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. The metastable states of proteins.Protein science : a publication of the Protein Society · 2020
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yong Hwan KimGraduate Program in Bioengineering, University of Notre Dame, Notre Dame, Indiana; Department of Computer Science and Engineering, University of Notre Dame, Notre Dame, Indiana.
Kevin Kastner
Badi Abdul-Wahid
Jesús A Izaguirre
University of Notre Dame · US

Funding

Chemistry-Biochemistry-Biology Training Program at Notre DameT32GM075762 · NIGMS · UNIVERSITY OF NOTRE DAME · PI CHANG, MAYLAND F, MOBASHERY, SHAHRIAR · 2007 to 2021
$3.7M
Enabling long timestep molecular dynamics on parallel CPU and GPU environmentsR01GM101935 · NIGMS · UNIVERSITY OF NOTRE DAME · PI IZAGUIRRE, JESUS ANTONIO · 2012 to 2015
$1.2M
NIGMS NIH HHS R01 GM101935NIGMS NIH HHS T32 GM075762
6 · The paper itself

Abstract

Insulin plays a central role in the regulation of metabolism in humans. Mutations in the insulin gene can impair the folding of its precursor protein, proinsulin, and cause permanent neonatal-onset diabetes mellitus known as Mutant INS-gene induced Diabetes of Youth (MIDY) with insulin deficiency. To gain insights into the molecular basis of this diabetes-associated mutation, we perform molecular dynamics simulations in wild-type and mutant (Cys(A7) to Tyr or C(A7)Y) insulin A chain in aqueous solutions. The C(A7)Y mutation is one of the identified mutations that impairs the protein folding by substituting the cysteine residue which is required for the disulfide bond formation. A comparative analysis reveals structural differences between the wild-type and the mutant conformations. The analyzed mutant insulin A chain forms a metastable state with major effects on its N-terminal region. This suggests that MIDY mutant involves formation of a partially folded intermediate with conformational change in N-terminal region in A chain that generates flexible N-terminal domain. This may lead to the abnormal interactions with other proinsulins in the aggregation process.

Indexed as

Diabetes MellitusHumansInsulinMolecular Dynamics SimulationProtein ConformationInsulincomputer simulationconformationdynamicinsulinmetastable statemutant

Identifiers

PMID25641314
PMCPMC4382306
OpenAlexW1889583351

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.