Evidence map›Paper›PMID 25640676›Full record

ArticleAmerican journal of human genetics2015

Adjusting for heritable covariates can bias effect estimates in genome-wide association studies.

Hugues Aschard, Bjarni J Vilhjálmsson, Amit D Joshi, Alkes L Price, Peter Kraft

Abstract read
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 185 papers, 26 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
185citing papers in PubMed, 26 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

185 citing papers in PubMed, 26 syntheses or guidelines pooled it.

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  10. Genome-Wide Association Study for eGFR in a Taiwanese Population.Clinical journal of the American Society of Nephrology : CJASN · 2022
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  13. Is Genetic Risk for Sleep Apnea Causally Linked With Glaucoma Susceptibility?Investigative ophthalmology & visual science · 2022
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  18. Meta-Analysis of Genomewide Association Studies Reveals Genetic Variants for Hip Bone Geometry.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2019
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125 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Hugues AschardDepartment of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA. Electronic address: haschard@hsph.harvard.edu.
Bjarni J VilhjálmssonDepartment of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA.
Amit D JoshiDepartment of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA.
Alkes L PriceDepartment of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA.
Peter KraftDepartment of Epidemiology, Harvard School of Public Health, Boston, MA 02115, USA.

Funding

Epidemiologic StudiesU19CA148065 · NCI · HARVARD SCHOOL OF PUBLIC HEALTH · PI AHSAN, HABIBUL, BRUGGE, JOAN SIEFERT · 2010 to 2014
$10.6M
Liability threshold modeling of genes and environment in case-control studiesR21ES020754 · NIEHS · HARVARD SCHOOL OF PUBLIC HEALTH · PI PRICE, ALKES L · 2012 to 2014
$496k
Relaxing genetic models to identify genetic variants involved in gene-gene and geR03HG006720 · NHGRI · HARVARD SCHOOL OF PUBLIC HEALTH · PI ASCHARD, HUGUES · 2013 to 2014
$162k
NCI NIH HHS U19 CA148065NHGRI NIH HHS R03 HG006720NIEHS NIH HHS R21 ES020754
6 · The paper itself

Abstract

In recent years, a number of large-scale genome-wide association studies have been published for human traits adjusted for other correlated traits with a genetic basis. In most studies, the motivation for such an adjustment is to discover genetic variants associated with the primary outcome independently of the correlated trait. In this report, we contend that this objective is fulfilled when the tested variants have no effect on the covariate or when the correlation between the covariate and the outcome is fully explained by a direct effect of the covariate on the outcome. For all other scenarios, an unintended bias is introduced with respect to the primary outcome as a result of the adjustment, and this bias might lead to false positives. Here, we illustrate this point by providing examples from published genome-wide association studies, including large meta-analysis of waist-to-hip ratio and waist circumference adjusted for body mass index (BMI), where genetic effects might be biased as a result of adjustment for body mass index. Using both theory and simulations, we explore this phenomenon in detail and discuss the ramifications for future genome-wide association studies of correlated traits and diseases.

Indexed as

Genetic VariationModels, GeneticQuantitative Trait, HeritableBody Mass IndexComputer SimulationGenome-Wide Association StudyHumansWaist CircumferenceWaist-Hip Ratio

Identifiers

PMID25640676
PMCPMC4320269

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.