Evidence map›Paper›PMID 25640237›Full record

ArticleCell2015

On-enzyme refolding permits small RNA and tRNA surveillance by the CCA-adding enzyme.

Claus-D Kuhn, Jeremy E Wilusz, Yuxuan Zheng, Peter A Beal, Leemor Joshua-Tor

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The regulation, function and disease relevance of cytoplasmic tRNAs.Nature reviews. Molecular cell biology · 2026
    Review
  5. Archaeal RNA processing and regulation: expanding the functional landscape.Microbiology and molecular biology reviews : MMBR · 2025
    Review
  6. Two complementingRNA biology · 2025
    Article
  7. Crystal structure of the CCA-adding enzyme fromJournal of structural biology: X · 2025
    Article
  8. Structural basis of NEAT1 lncRNA maturation and menRNA instability.Nature structural & molecular biology · 2024
    Article
  9. Trade-offs and thermodynamics of energy-relay proofreading.Journal of the Royal Society, Interface · 2024
    Article
  10. Review
  11. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  12. Article
  13. NovelViruses · 2022
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Claus-D KuhnW.M. Keck Structural Biology Laboratory, Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA.
Jeremy E WiluszDepartment of Biochemistry and Biophysics, University of Pennsylvania Perelman School of Medicine, 415 Curie Boulevard, Philadelphia, PA 19104, USA.
Yuxuan ZhengDepartment of Chemistry, University of California, Davis, 1 Shields Ave, Davis, CA 95616, USA.
Peter A BealDepartment of Chemistry, University of California, Davis, 1 Shields Ave, Davis, CA 95616, USA.
Leemor Joshua-TorW.M. Keck Structural Biology Laboratory, Howard Hughes Medical Institute, Cold Spring Harbor Laboratory, 1 Bungtown Road, Cold Spring Harbor, NY 11724, USA. Electronic address: leemor@cshl.edu.
University of California, Davis · USCold Spring Harbor Laboratory · USHoward Hughes Medical Institute · USUniversity of Pennsylvania · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
REGULATION OF MRNA PROCESSINGR01GM034277 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHARP, PHILLIP A · 1985 to 2021
$8.0M
Stress and Proliferation States Impact MicroRNA-Mediated Regulation in CancerR01CA133404 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHARP, PHILLIP A · 2008 to 2017
$4.6M
The Bioorganic Chemistry Of RNA Editing By ADARSR01GM061115 · NIGMS · UNIVERSITY OF UTAH · PI BEAL, PETER A. · 2001 to 2020
$4.5M
Regulation of noncoding RNA biogenesis and functionR00GM104166 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WILUSZ, JEREMY E · 2014 to 2016
$735k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA045508NCI NIH HHS R01 CA133404NCI NIH HHS R01-CA133404NIGMS NIH HHS P41 GM111244NIGMS NIH HHS R00 GM104166NIGMS NIH HHS R00-GM104166NIGMS NIH HHS R01 GM034277NIGMS NIH HHS R01 GM061115NIGMS NIH HHS R01-GM34277NIGMS NIH HHS R01-GM61115
6 · The paper itself

Abstract

Transcription in eukaryotes produces a number of long noncoding RNAs (lncRNAs). Two of these, MALAT1 and Menβ, generate a tRNA-like small RNA in addition to the mature lncRNA. The stability of these tRNA-like small RNAs and bona fide tRNAs is monitored by the CCA-adding enzyme. Whereas CCA is added to stable tRNAs and tRNA-like transcripts, a second CCA repeat is added to certain unstable transcripts to initiate their degradation. Here, we characterize how these two scenarios are distinguished. Following the first CCA addition cycle, nucleotide binding to the active site triggers a clockwise screw motion, producing torque on the RNA. This ejects stable RNAs, whereas unstable RNAs are refolded while bound to the enzyme and subjected to a second CCA catalytic cycle. Intriguingly, with the CCA-adding enzyme acting as a molecular vise, the RNAs proofread themselves through differential responses to its interrogation between stable and unstable substrates.

Indexed as

Archaeoglobus fulgidusBase SequenceCatalytic DomainHumansMitochondriaModels, MolecularNucleic Acid ConformationRNA NucleotidyltransferasesRNA, Small UntranslatedRNA StabilityRNA, TransferRNA NucleotidyltransferasesRNA, Small UntranslatedRNA, TransfertRNA nucleotidyltransferase

Identifiers

PMID25640237
PMCPMC4329729
OpenAlexW2043094937

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.