Evidence map›Paper›PMID 25640183›Full record

ArticleCell reports2015

Functional consequences of 17q21.31/WNT3-WNT9B amplification in hPSCs with respect to neural differentiation.

Chun-Ting Lee, Raphael M Bendriem, Abigail A Kindberg, Lila T Worden, Melanie P Williams, Tomas Drgon, Barbara S Mallon, Brandon K Harvey, Christopher T Richie, Rebecca S Hamilton and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Culture-acquired genetic variation in human pluripotent stem cells: Twenty years on.BioEssays : news and reviews in molecular, cellular and developmental biology · 2024
    Review
  5. Transcriptional consequences of trisomy 21 on neural induction.Frontiers in cellular neuroscience · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Inborn errors of metabolism: Lessons from iPSC models.Reviews in endocrine & metabolic disorders · 2021
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Review
  16. Review
  17. CYP3A5 Mediates Effects of Cocaine on Human Neocorticogenesis: Studies using an In Vitro 3D Self-Organized hPSC Model with a Single Cortex-Like Unit.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2017
    Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 1 country.

Chun-Ting LeeIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA. Electronic address: clee@mail.nih.gov.
Raphael M BendriemIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Abigail A KindbergIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Lila T WordenIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Melanie P WilliamsIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Tomas DrgonIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Barbara S MallonNIH Stem Cell Unit, Intramural Research Program, National Institute of Neurological Disorders and Stroke, Department of Health and Human Services, NIH, Bethesda, MD 20892, USA.
Brandon K HarveyIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Christopher T RichieIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Rebecca S HamiltonNIH Stem Cell Unit, Intramural Research Program, National Institute of Neurological Disorders and Stroke, Department of Health and Human Services, NIH, Bethesda, MD 20892, USA.
Jia ChenIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Stacie L ErricoIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
Shang-Yi A TsaiIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
George R UhlIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
William J FreedIntramural Research Program, National Institute on Drug Abuse, Department of Health and Human Services, NIH, Baltimore, MD 21224, USA.
National Institute on Drug Abuse · USNational Institute of Neurological Disorders and Stroke · US

Funding

Human pluripotent stem cellsZICNS003008 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI ROBEY, PAMELA · 2009 to 2025
$21.2M
Optogenetics and Transgenic Technology CoreZICDA000555 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI HARVEY, BRANDON · 2009 to 2017
$10.0M
Human Embryonic Stem Cells: Characterization and Dopaminergic DifferentiationZIADA000472 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI FREED, WILLIAM · 2009 to 2015
$7.7M
Mechanisms Responsible for Impairment of Neocortical Development by CocaineZIADA000491 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI FREED, WILLIAM · 2009 to 2015
$4.6M
Genetic Approaches To Characterizing Drug Responses And Vulnerabilities: HumansZIADA000401 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI UHL, GEORGE RICHARD · 2009 to 2015
$3.4M
Gene Delivery and AddictionZIADA000526 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI HARVEY, BRANDON · 2009 to 2022
$3.2M
Gene Therapy And NeurodegenerationZIADA000443 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI HARVEY, BRANDON · 2009 to 2020
$2.7M
Intramural NIH HHS Z99 DA999999
6 · The paper itself

Abstract

Human pluripotent stem cell (hPSC) lines exhibit repeated patterns of genetic variation, which can alter in vitro properties as well as suitability for clinical use. We examined associations between copy-number variations (CNVs) on chromosome 17 and hPSC mesodiencephalic dopaminergic (mDA) differentiation. Among 24 hPSC lines, two karyotypically normal lines, BG03 and CT3, and BG01V2, with trisomy 17, exhibited amplification of the WNT3/WNT9B region and rapid mDA differentiation. In hPSC lines with amplified WNT3/WNT9B, basic fibroblast growth factor (bFGF) signaling through mitogen-activated protein kinase (MAPK)/ERK amplifies canonical WNT signaling by phosphorylating LRP6, resulting in enhanced undifferentiated proliferation. When bFGF is absent, noncanonical WNT signaling becomes dominant due to upregulation of SIAH2, enhancing JNK signaling and promoting loss of pluripotency. When bFGF is present during mDA differentiation, stabilization of canonical WNT signaling causes upregulation of LMX1A and mDA induction. Therefore, CNVs in 17q21.31, a "hot spot" for genetic variation, have multiple and complex effects on hPSC cellular phenotype.

Indexed as

Cell DifferentiationCell LineHumansJNK Mitogen-Activated Protein KinasesNeuronsPluripotent Stem CellsSignal TransductionWnt3 ProteinWnt ProteinsJNK Mitogen-Activated Protein KinasesWnt3 ProteinWNT9B protein, humanWnt Proteins

Identifiers

PMID25640183
PMCPMC4383664
OpenAlexW2040616315

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.