Evidence map›Paper›PMID 25639563›Full record

ArticleTraffic (Copenhagen, Denmark)2015

Molecular Analysis and Localization of CaARA7 a Conventional RAB5 GTPase from Characean Algae.

Marion C Hoepflinger, Anja Geretschlaeger, Aniela Sommer, Margit Hoeftberger, Christina Hametner, Takashi Ueda, Ilse Foissner

Abstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Measurement of KRAS-GTPase Activity.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  3. Article
  4. Article
  5. Clathrin inFrontiers in plant science · 2017
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Marion C HoepflingerDepartment of Cell Biology/Plant Physiology, University of Salzburg, Hellbrunnerstrasse 34, 5020, Salzburg, Austria.
Anja Geretschlaeger
Aniela Sommer
Margit Hoeftberger
Christina Hametner
Takashi Ueda
Ilse Foissner
University of Salzburg · ATThe University of Tokyo · JP

Funding

Austrian Science Fund FWF P 22957
6 · The paper itself

Abstract

RAB5 GTPases are important regulators of endosomal membrane traffic. Among them Arabidopsis thaliana ARA7/RABF2b is highly conserved and homologues are present in fungal, animal and plant kingdoms. In land plants ARA7 and its homologues are involved in endocytosis and transport towards the vacuole. Here we report on the isolation of an ARA7 homologue (CaARA7/CaRABF2) in the highly evolved characean green alga Chara australis. It encodes a polypeptide of 202 amino acids with a calculated molecular mass of 22.2 kDa and intrinsic GTPase activity. Immunolabelling of internodal cells with a specific antibody reveals CaARA7 epitopes at multivesicular endosomes (MVEs) and at MVE-containing wortmannin (WM) compartments. When transiently expressed in epidermal cells of Nicotiana benthamiana leaves, fluorescently tagged CaARA7 localizes to small organelles (putative MVEs) and WM compartments, and partially colocalizes with AtARA7 and CaARA6, a plant specific RABF1 GTPase. Mutations in membrane anchoring and GTP binding sites alter localization of CaARA7 and affect GTPase activity, respectively. This first detailed study of a conventional RAB5 GTPase in green algae demonstrates that CaARA7 is similar to RAB5 GTPases from land plants and other organisms and shows conserved structure and localization.

Indexed as

Algal ProteinsAmino Acid SequenceArabidopsisArabidopsis ProteinsCharaceaeElectrophoresis, Polyacrylamide GelMolecular Sequence DataPhylogenyPlant LeavesPoint Mutationrab5 GTP-Binding Proteinsrab GTP-Binding ProteinsSequence AlignmentSequence Homology, Amino AcidAlgal ProteinsAra7 protein, ArabidopsisArabidopsis Proteinsrab5 GTP-Binding Proteinsrab GTP-Binding ProteinsARA7Chara australisendosomal traffickingmultivesicular endosomeRAB5 GTPaseRABF2

Identifiers

PMID25639563
PMCPMC4898595
OpenAlexW2135521172

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.