Evidence map›Paper›PMID 25639204›Full record

ArticleScientific reports2015

Integrative analysis of differentially expressed microRNAs of pulmonary alveolar macrophages from piglets during H1N1 swine influenza A virus infection.

Pengfei Jiang, Na Zhou, Xinyu Chen, Xing Zhao, Dengyun Li, Fen Wang, Lijun Bi, Deli Zhang

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Aflatoxin BFrontiers in immunology · 2018
    Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Pengfei Jiang1] College of Veterinary Medicine, Northwest A&F University, Yangling, Xi'an City, Shaanxi, 712100, P. R. China [2] Department of Microbiology &Immunology, School of Basic Medical Sciences, Wenzhou Medical University, Wenzhou, Zhejiang, 325035, P. R. China.
Na ZhouCollege of Veterinary Medicine, Northwest A&F University, Yangling, Xi'an City, Shaanxi, 712100, P. R. China.
Xinyu ChenCollege of Veterinary Medicine, Northwest A&F University, Yangling, Xi'an City, Shaanxi, 712100, P. R. China.
Xing ZhaoCollege of Veterinary Medicine, Northwest A&F University, Yangling, Xi'an City, Shaanxi, 712100, P. R. China.
Dengyun LiCollege of Veterinary Medicine, Northwest A&F University, Yangling, Xi'an City, Shaanxi, 712100, P. R. China.
Fen WangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Xi'an City, Shaanxi, 712100, P. R. China.
Lijun BiState Key Laboratory of Biology Macromolecule, Institute of Biophysics, Chinese Academy of Sciences, 100101, Beijing, P. R. China.
Deli ZhangCollege of Veterinary Medicine, Northwest A&F University, Yangling, Xi'an City, Shaanxi, 712100, P. R. China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

H1N1 swine influenza A virus (H1N1 SwIV) is one key subtype of influenza viruses with pandemic potential. MicroRNAs (miRNAs) are endogenous small RNA molecules that regulate gene expression. MiRNAs relevant with H1N1 SwIV have rarely been reported. To understand the biological functions of miRNAs during H1N1 SwIV infection, this study profiled differentially expressed (DE) miRNAs in pulmonary alveolar macrophages from piglets during the H1N1 SwIV infection using a deep sequencing approach, which was validated by quantitative real-time PCR. Compared to control group, 70 and 16 DE miRNAs were respectively identified on post-infection day (PID) 4 and PID 7. 56 DE miRNAs were identified between PID 4 and PID 7. Our results suggest that most host miRNAs are down-regulated to defend the H1N1 SwIV infection during the acute phase of swine influenza whereas their expression levels gradually return to normal during the recovery phase to avoid the occurrence of too severe porcine lung damage. In addition, targets of DE miRNAs were also obtained, for which bioinformatics analyses were performed. Our results would be useful for investigating the functions and regulatory mechanisms of miRNAs in human influenza because pig serves as an excellent animal model to study the pathogenesis of human influenza.

Indexed as

AnimalsCluster AnalysisComputational BiologyDown-RegulationHigh-Throughput Nucleotide SequencingInfluenza A Virus, H1N1 SubtypeLungMacrophages, AlveolarMicroRNAsOrthomyxoviridae InfectionsProtein Interaction MapsReal-Time Polymerase Chain ReactionSequence Analysis, DNASwineSwine DiseasesMicroRNAs

Identifiers

PMID25639204
PMCPMC5389138

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.