Evidence map›Paper›PMID 25638043›Full record

ArticleMolecular biology reports2015

Genome-wide identification and expression profiling of the late embryogenesis abundant genes in potato with emphasis on dehydrins.

Safa Charfeddine, Mohammed Najib Saïdi, Mariam Charfeddine, Radhia Gargouri-Bouzid

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Article in Molecular biology reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Plants (Basel, Switzerland) · 2023
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  9. Article
  10. Review
  11. Genome-Wide Identification ofFrontiers in plant science · 2022
    Article
  12. Review
  13. Article
  14. Article
  15. Article
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  17. Article
  18. Article
  19. Contrasting Effects of WildFrontiers in plant science · 2019
    Article
  20. Article
4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Safa CharfeddineUnité Enzymes et Bioconversion, Ecole Nationale d'Ingénieurs de Sfax, Route Soukra Km 4, B.P 1173, 3038, Sfax, Tunisia, charfeddine_safa@yahoo.fr.
Mohammed Najib Saïdi
Mariam Charfeddine
Radhia Gargouri-Bouzid

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Late embryogenesis abundant (LEA) proteins were first described as accumulating late in plant seed development. They were also shown to be involved in plant responses to environmental stress and as well as in bacteria, yeast and invertebrates. They are known to play crucial roles in dehydration tolerance. This study describes a genome-wide analysis of LEA proteins and the corresponding genes in Solanum tuberosum. Twenty-nine LEA family members encoding genes in the Solanum genome were identified. Phylogenetic analyses allowed the classification of the potato LEA proteins into nine distinct groups. Some of them were identified as putative orthologs of Arabidopsis and rice LEA genes. In silico analyses confirmed the hydrophilicity of most of the StLEA proteins, whereas some of them can be folded. The in silico expression analyses showed that the identified genes displayed tissue-specific, stress and hormone-responsive expression profiles. Five StLEA classified as dehydrins were selected for expression analyses under salt and drought stresses. The data revealed that they were induced by both stresses. The analyses indicate that several factors such us developmental stages, hormones, and dehydration, can regulate the expression and activities of LEA protein. This report can be helpful for the further functional diversity studies and analyses of LEA proteins in potato. These genes can be overexpressed to improve potato abiotic stress response.

Indexed as

Gene Expression Regulation, PlantGenome, PlantAdaptation, PhysiologicalArabidopsisChromosome MappingDesiccationDroughtsGene Expression ProfilingGene Expression Regulation, DevelopmentalOryzaPhylogenyPlant ProteinsProtein FoldingSeedsSolanum tuberosumStress, Physiologicaldehydrin proteins, plantPlant Proteins

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.