Evidence map›Paper›PMID 25637770›Full record

ArticleArchives of biochemistry and biophysics2015

The Mtm1p carrier and pyridoxal 5'-phosphate cofactor trafficking in yeast mitochondria.

Mei M Whittaker, Aravind Penmatsa, James W Whittaker

Abstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. Article
  10. Genetic Analysis Using Vitamin BJournal of bacteriology · 2022
    Article
  11. Regulation of Heme Synthesis by Mitochondrial Homeostasis Proteins.Frontiers in cell and developmental biology · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Mitochondrial Carriers and Substrates Transport Network: A Lesson fromInternational journal of molecular sciences · 2021
    Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mei M WhittakerInstitute of Environmental Health, Division of Environmental and Biomolecular Systems, Oregon Health and Science University, Portland, OR 97239-3098, USA.
Aravind PenmatsaVollum Institute, Oregon Health and Science University, Portland, OR 97239-3098, USA.
James W WhittakerInstitute of Environmental Health, Division of Environmental and Biomolecular Systems, Oregon Health and Science University, Portland, OR 97239-3098, USA. Electronic address: whittakj@ohsu.edu.
Oregon Health & Science University · US

Funding

MANGANESE REDOX BIOCHEMISTRYR01GM042680 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI WHITTAKER, JAMES W · 1989 to 2012
$3.0M
NIGMS NIH HHS R01 GM042680NIGMS NIH HHS R01 GM42680
6 · The paper itself

Abstract

Biochemical communication between the cytoplasmic and mitochondrial subsystems of the cell depends on solute carriers in the mitochondrial inner membrane that transport metabolites between the two compartments. We have expressed and purified a yeast mitochondrial carrier protein (Mtm1p, YGR257cp), originally identified as a manganese ion carrier, for biochemical characterization aimed at resolving its function. High affinity, stoichiometric pyridoxal 5'-phosphate (PLP) cofactor binding was characterized by fluorescence titration and calorimetry, and the biochemical effects of mtm1 gene deletion on yeast mitochondria were investigated. The PLP status of the mitochondrial proteome (the mitochondrial 'PLP-ome') was probed by immunoblot analysis of mitochondria isolated from wild type (MTM1(+)) and knockout (MTM1(-)) yeast, revealing depletion of mitochondrial PLP in the latter. A direct activity assay of the enzyme catalyzing the first committed step of heme biosynthesis, the PLP-dependent mitochondrial enzyme 5-aminolevulinate synthase, extends these results, providing a specific example of PLP cofactor limitation. Together, these experiments support a role for Mtm1p in mitochondrial PLP trafficking and highlight the link between PLP cofactor transport and iron metabolism, a remarkable illustration of metabolic integration.

Indexed as

5-Aminolevulinate SynthetaseCarrier ProteinsGene DeletionIronMitochondriaMitochondrial ProteinsPyridoxal PhosphateSaccharomyces cerevisiaeSaccharomyces cerevisiae Proteins5-Aminolevulinate SynthetaseCarrier ProteinsIronMitochondrial ProteinsMtm1 protein, S cerevisiaePyridoxal PhosphateSaccharomyces cerevisiae ProteinsHeme biosynthesisIron homeostasisMitochondrial carrier proteinPyridoxal 5′-phosphate

Identifiers

PMID25637770
PMCPMC4723269
OpenAlexW2008586628

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.