Evidence map›Paper›PMID 25637661›Full record

ArticleJournal of molecular biology2015

A structural rearrangement of the Na+/K+-ATPase traps ouabain within the external ion permeation pathway.

Jorge E Sánchez-Rodríguez, Fatemeh Khalili-Araghi, Pablo Miranda, Benoît Roux, Miguel Holmgren, Francisco Bezanilla

Abstract read
In one paragraph

Article in Journal of molecular biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. FXYD proteins and sodium pump regulatory mechanisms.The Journal of general physiology · 2021
    Review
  2. Displacement of the NaProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  3. Article
  4. Retinoschisin and Cardiac Glycoside Crosstalk at the Retinal Na/K-ATPase.Investigative ophthalmology & visual science · 2020
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jorge E Sánchez-RodríguezDepartment of Biochemistry and Molecular Biology, The University of Chicago Gordon Center for Integrative Science, Chicago, IL 60637, USA.
Fatemeh Khalili-AraghiDepartment of Physics, University of Illinois at Chicago, Chicago, IL 60607, USA.
Pablo MirandaMolecular Neurophysiology Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA.
Benoît RouxDepartment of Biochemistry and Molecular Biology, The University of Chicago Gordon Center for Integrative Science, Chicago, IL 60637, USA. Electronic address: roux@uchicago.edu.
Miguel HolmgrenMolecular Neurophysiology Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: Holmgren@ninds.nih.gov.
Francisco BezanillaDepartment of Biochemistry and Molecular Biology, The University of Chicago Gordon Center for Integrative Science, Chicago, IL 60637, USA. Electronic address: fbezanilla@uchicago.edu.
National Institutes of Health · USUniversity of Illinois Chicago · US

Funding

Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI PEROZO, EDUARDO A · 2010 to 2017
$31.9M
Structure and Function of Membrane ProteinsZIANS002993 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI HOLMGREN, MIGUEL · 2009 to 2025
$24.0M
The Electrophysiological Studies of Voltage Gated ChannelsR01GM030376 · NIGMS · UNIVERSITY OF CHICAGO · PI BEZANILLA, FRANCISCO J · 1985 to 2025
$9.1M
Computational Studies of Ion Channels - Resubmission 01R01GM062342 · NIGMS · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI ROUX, BENOIT · 2001 to 2022
$8.7M
Structure and Function of Membrane ProteinsZ01NS002993 · NINDS · NEUROLOGICAL DISORDERS AND STROKE · PI HOLMGREN, MIGUEL · 2002 to 2008
$1.1M
Intramural NIH HHS Z01 NS002993NIGMS NIH HHS R01 GM030376NIGMS NIH HHS R01-GM030376NIGMS NIH HHS R01 GM062342NIGMS NIH HHS R01-GM062342NIGMS NIH HHS U54 GM087519NIGMS NIH HHS U54-GM087519
6 · The paper itself

Abstract

With the use of the energy of ATP hydrolysis, the Na+/K+-ATPase is able to transport across the cell membrane Na+ and K+ against their electrochemical gradients. The enzyme is strongly inhibited by ouabain and its derivatives, some that are therapeutically used for patients with heart failure (cardiotonic steroids). Using lanthanide resonance energy transfer, we trace here the conformational changes occurring on the external side of functional Na+/K+-ATPases induced by the binding of ouabain. Changes in donor/acceptor pair distances are mainly observed within the α subunit of the enzyme. To derive a structural model matching the experimental lanthanide resonance energy transfer distances measured with bound ouabain, we carried out molecular dynamics simulations with energy restraints applied simultaneously using a novel methodology with multiple non-interacting fragments. The restrained simulation, initiated from the X-ray structure of the E2(2K+) state, became strikingly similar to the X-ray structure of the sodium-bound state. The final model shows that ouabain is trapped within the external ion permeation pathway of the pump.

Indexed as

Adenosine DiphosphateAnimalsCell Membrane PermeabilityCrystallography, X-RayDecapodiformesFluorescence Resonance Energy TransferLanthanoid Series ElementsMolecular Dynamics SimulationOuabainPotassiumProtein BindingProtein ConformationProtein SubunitsSodiumSodium-Potassium-Exchanging ATPaseAdenosine DiphosphateLanthanoid Series ElementsOuabainPotassiumProtein SubunitsSodiumSodium-Potassium-Exchanging ATPasecardiotonic steroidsenergy transferion transportmembrane proteinsodium/potassium pump

Identifiers

PMID25637661
PMCPMC4457281
OpenAlexW2058036292

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.