Evidence map›Paper›PMID 25637630›Full record

ArticleThe Journal of biological chemistry2015

A novel mechanism of regulating the ATPase VPS4 by its cofactor LIP5 and the endosomal sorting complex required for transport (ESCRT)-III protein CHMP5.

Cody J Vild, Yan Li, Emily Z Guo, Yuan Liu, Zhaohui Xu

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

  1. ESCRT-III function in membrane fission and repair.Nature reviews. Molecular cell biology · 2026
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Proteomic analysis of diabetic retinas.Frontiers in endocrinology · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Structural Insights into AQP2 Targeting to Multivesicular Bodies.International journal of molecular sciences · 2019
    Article
  12. Plant and Mammal Aquaporins: Same but Different.International journal of molecular sciences · 2018
    Review
  13. Aquaporin Protein-Protein Interactions.International journal of molecular sciences · 2017
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Cody J VildFrom the Life Sciences Institute and Department of Biological Chemistry, Medical School, University of Michigan, Ann Arbor, Michigan 48109.
Yan LiFrom the Life Sciences Institute and.
Emily Z GuoFrom the Life Sciences Institute and.
Yuan LiuFrom the Life Sciences Institute and.
Zhaohui XuFrom the Life Sciences Institute and Department of Biological Chemistry, Medical School, University of Michigan, Ann Arbor, Michigan 48109 zhaohui@umich.edu.
University of Michigan–Ann Arbor · US

Funding

Structural Basis of Membrane Scission: Regulation of the Vps4 ATPase ComplexR01GM095769 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI XU, ZHAOHUI · 2011 to 2014
$1.2M
NIGMS NIH HHS GM095769NIGMS NIH HHS R01 GM095769
6 · The paper itself

Abstract

Disassembly of the endosomal sorting complex required for transport (ESCRT) machinery from biological membranes is a critical final step in cellular processes that require the ESCRT function. This reaction is catalyzed by VPS4, an AAA-ATPase whose activity is tightly regulated by a host of proteins, including LIP5 and the ESCRT-III proteins. Here, we present structural and functional analyses of molecular interactions between human VPS4, LIP5, and the ESCRT-III proteins. The N-terminal domain of LIP5 (LIP5NTD) is required for LIP5-mediated stimulation of VPS4, and the ESCRT-III protein CHMP5 strongly inhibits the stimulation. Both of these observations are distinct from what was previously described for homologous yeast proteins. The crystal structure of LIP5NTD in complex with the MIT (microtubule-interacting and transport)-interacting motifs of CHMP5 and a second ESCRT-III protein, CHMP1B, was determined at 1 Å resolution. It reveals an ESCRT-III binding induced moderate conformational change in LIP5NTD, which results from insertion of a conserved CHMP5 tyrosine residue (Tyr(182)) at the core of LIP5NTD structure. Mutation of Tyr(182) partially relieves the inhibition displayed by CHMP5. Together, these results suggest a novel mechanism of VPS4 regulation in metazoans, where CHMP5 functions as a negative allosteric switch to control LIP5-mediated stimulation of VPS4.

Indexed as

Protein Interaction MapsAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesCrystallography, X-RayEndosomal Sorting Complexes Required for TransportHumansModels, MolecularProtein ConformationProtein Interaction Domains and MotifsAdenosine TriphosphatasesATPases Associated with Diverse Cellular ActivitiesCHMP5 protein, humanEndosomal Sorting Complexes Required for TransportVPS4B protein, humanVTA1 protein, humanATPaseCHMP5Crystal StructureEndosomal Sorting Complexes Required for Transport (ESCRT)LIP5Membrane TraffickingMIT-MIMMultivesicular BodyProtein-Protein InteractionVPS4

Identifiers

PMID25637630
PMCPMC4358147
OpenAlexW2146718575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.