Evidence map›Paper›PMID 25636850›Full record

ArticleApplied and environmental microbiology2015

Multifactorial effects of ambient temperature, precipitation, farm management, and environmental factors determine the level of generic Escherichia coli contamination on preharvested spinach.

Sangshin Park, Sarah Navratil, Ashley Gregory, Arin Bauer, Indumathi Srinath, Barbara Szonyi, Kendra Nightingale, Juan Anciso, Mikyoung Jun, Daikwon Han and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 51 citations in OpenAlex.

  1. Review
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  8. Modelling of IndicatorInternational journal of environmental research and public health · 2019
    Article
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  11. Review
  12. Oral microbiome and history of smoking and colorectal cancer.Journal of epidemiological research · 2016
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Sangshin ParkDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, USA Center for International Health Research, Rhode Island Hospital, The Warren Alpert Medical School of Brown University, Providence, Rhode Island, USA dvm.spark@gmail.com.ORCID http://orcid.org/0000-0003-2407-0962
Sarah NavratilDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA Department of Animal and Food Sciences, Texas Tech University, Lubbock, Texas, USA.
Ashley GregoryDepartment of Horticultural Sciences, Texas A&M AgriLife Extension Service, Weslaco, Texas, USA.
Arin BauerDepartment of Horticultural Sciences, Texas A&M AgriLife Extension Service, Weslaco, Texas, USA.
Indumathi SrinathDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, USA Tarleton State University, Stephenville, Texas, USA.
Barbara SzonyiDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, USA.
Kendra NightingaleDepartment of Animal Sciences, Colorado State University, Fort Collins, Colorado, USA Department of Animal and Food Sciences, Texas Tech University, Lubbock, Texas, USA.
Juan AncisoDepartment of Horticultural Sciences, Texas A&M AgriLife Extension Service, Weslaco, Texas, USA.
Mikyoung JunDepartment of Statistics, Texas A&M University, College Station, Texas, USA.
Daikwon HanDepartment of Epidemiology and Biostatistics, School of Public Health, Texas A&M Health Science Center, College Station, Texas, USA.
Sara LawhonDepartment of Veterinary Pathobiology, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, USA.ORCID http://orcid.org/0000-0001-9154-8909
Renata IvanekDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, Texas, USA.
Texas A&M University · USTexas Tech University · USBrown University · USTarleton State University · USTexas A&M Health Science Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A repeated cross-sectional study was conducted to identify farm management, environment, weather, and landscape factors that predict the count of generic Escherichia coli on spinach at the preharvest level. E. coli was enumerated for 955 spinach samples collected on 12 farms in Texas and Colorado between 2010 and 2012. Farm management and environmental characteristics were surveyed using a questionnaire. Weather and landscape data were obtained from National Resources Information databases. A two-part mixed-effect negative binomial hurdle model, consisting of a logistic and zero-truncated negative binomial part with farm and date as random effects, was used to identify factors affecting E. coli counts on spinach. Results indicated that the odds of a contamination event (non-zero versus zero counts) vary by state (odds ratio [OR] = 108.1). Odds of contamination decreased with implementation of hygiene practices (OR = 0.06) and increased with an increasing average precipitation amount (mm) in the past 29 days (OR = 3.5) and the application of manure (OR = 52.2). On contaminated spinach, E. coli counts increased with the average precipitation amount over the past 29 days. The relationship between E. coli count and the average maximum daily temperature over the 9 days prior to sampling followed a quadratic function with the highest bacterial count at around 24°C. These findings indicate that the odds of a contamination event in spinach are determined by farm management, environment, and weather factors. However, once the contamination event has occurred, the count of E. coli on spinach is determined by weather only.

Indexed as

Food ContaminationFood MicrobiologyAnimal HusbandryBacterial LoadColoradoCross-Sectional StudiesEnvironmentEscherichia coliModels, StatisticalRainSpinacia oleraceaTemperatureTexas

Identifiers

PMID25636850
PMCPMC4357951
OpenAlexW2074390188

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.