Evidence map›Paper›PMID 25636233›Full record

ArticleBMC cancer2015

Association of PALB2 sequence variants with the risk of familial and early-onset breast cancer in a South-American population.

Yessica Leyton, Patricio Gonzalez-Hormazabal, Rafael Blanco, Teresa Bravo, Ricardo Fernandez-Ramires, Sebastian Morales, Natalia Landeros, Jose M Reyes, Octavio Peralta, Julio C Tapia and 6 more

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Meta-Analysis of Association between PALB2 Polymorphisms and Breast CancerAsian Pacific journal of cancer prevention : APJCP · 2018
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Non-Journal of global oncology · 2019
    Article
  9. Review
  10. Article
  11. Review
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  13. Genomic Disparities in Breast Cancer Among Latinas.Cancer control : journal of the Moffitt Cancer Center · 2016
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Yessica LeytonHuman Genetics Program, Institute of Biomedical Sciences (ICBM), School of Medicine, University of Chile, Av. Independencia 1027, Santiago, Chile. yessica.leyton@gmail.com.
Patricio Gonzalez-HormazabalHuman Genetics Program, Institute of Biomedical Sciences (ICBM), School of Medicine, University of Chile, Av. Independencia 1027, Santiago, Chile. pgonzalez@med.uchile.cl.
Rafael BlancoHuman Genetics Program, Institute of Biomedical Sciences (ICBM), School of Medicine, University of Chile, Av. Independencia 1027, Santiago, Chile. rblanco@med.uchile.cl.
Teresa BravoNational Cancer Society (Corporación Nacional del Cáncer -CONAC-), Santiago, Chile. tbc_conac@edu.tie.cl.
Ricardo Fernandez-RamiresResearch Institute in Dental Sciences, School of Odontology, University of Chile, Sergio Livingstone Pohlhammer 943, Santiago, Chile. ramiresfernandez@gmail.com.
Sebastian MoralesHuman Genetics Program, Institute of Biomedical Sciences (ICBM), School of Medicine, University of Chile, Av. Independencia 1027, Santiago, Chile. seba.morales.p@gmail.com.
Natalia LanderosHuman Genetics Program, Institute of Biomedical Sciences (ICBM), School of Medicine, University of Chile, Av. Independencia 1027, Santiago, Chile. natalialanderos@udec.cl.
Jose M ReyesClínca Las Condes, Santiago, Chile. jmreyes@clc.cl.
Octavio PeraltaClínca Las Condes, Santiago, Chile. operalta@med.uchile.cl.
Julio C TapiaCell Transformation Laboratory, Institute of Biomedical Sciences (ICBM), School of Medicine, Unversity of Chile, Av. Independencia 1027, Santiago, Chile. jtapia@med.uchile.cl.
Fernando GomezClínica Santa María, Santiago, Chile. fgomez@csm.cl.
Enrique WaughClínica Santa María, Santiago, Chile. ewaugh@csm.cl.
Gladys IbañezClínica Dávila, Av. Recoleta 464, Santiago, Chile. gibanez@cancerdemama.cl.
Janara PakomioHuman Genetics Program, Institute of Biomedical Sciences (ICBM), School of Medicine, University of Chile, Av. Independencia 1027, Santiago, Chile. jpakomiob@gmail.com.
Gilberto GrauHuman Genetics Program, Institute of Biomedical Sciences (ICBM), School of Medicine, University of Chile, Av. Independencia 1027, Santiago, Chile. gvgrau@gmail.com.
Lilian JaraHuman Genetics Program, Institute of Biomedical Sciences (ICBM), School of Medicine, University of Chile, Av. Independencia 1027, Santiago, Chile. ljara@med.uchile.cl.
University of Chile · CLClínica Las Condes · CLClinica Santa Maria · CLHospital Padre Hurtado · CLInria Chile · CLInstituto Nacional del Cáncer · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGermline mutations in PALB2 have been identified in approximately 1% of familial breast cancer (BC) in several populations. Nevertheless its contribution in the South-American population is unknown. The goal of this study was to determine the prevalence of PALB2 mutations in the Chilean population.

methods100 Chilean BRCA1/2-negatives familial BC cases were included for the PALB2 mutation analysis. We use conformational sensitive gel electrophoresis and direct sequencing. Using a case-control design, we studied the identified variants in 436 BC cases and 809 controls to evaluate their possible association with BC risk.

resultsNo pathogenic mutations were detected. We identified three variants, the variant c.1861C > A not previously described was found in one of the 436 cases and none of the 809 controls. The bioinformatic analyses indicate that this variant probably is not pathogenic. PALB2 c.1676A > G (rs152451A/G) and c.2993C > T (rs45551636C/T) variants were significantly associated with increased BC risk only in cases with a strong family history of BC (OR = 1.9 [CI 95% 1.3-2.8] p < 0.01 and OR = 3.3 [CI 95% 1.4-7.3] p < 0.01, respectively). The rs152451A/G-rs45551636C/T composite genotype produce increase of the BC risk in cases with a strong family history of BC (OR = 3.6 [CI 95% 1.7-8.0] p = 0.003). The rs152451-G/rs45551636-C and rs152451-G/rs45551636-T haplotypes were associated with an increased BC risk only in cases with a strong family history of BC (OR = 1.6 [CI 95% 1.0-2.5] p = 0.05 and OR = 3.7 [CI 95% 1.8-7.5] p < 0.001, respectively).

conclusionOur results suggest that PALB2 c.1676A > G and c.2993C > T play roles in BC risk in women with a strong family history of BC.

Indexed as

Genetic Predisposition to DiseaseGenetic VariationAdultAge of OnsetAllelesBreast NeoplasmsCase-Control StudiesChileComputational BiologyDNA Mutational AnalysisFanconi Anemia Complementation Group N ProteinFemaleGene FrequencyGenotypeHaplotypesHumansFanconi Anemia Complementation Group N ProteinNuclear ProteinsPALB2 protein, humanTumor Suppressor Proteins

Identifiers

PMID25636233
PMCPMC4323211
OpenAlexW2038992163

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.