ArticlePloS one2015
Identification of associated SSR markers for yield component and fiber quality traits based on frame map and Upland cotton collections.
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers, 1 of them a synthesis that pooled it.
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Who cites it
36 citing papers in PubMed, 1 synthesis or guideline pooled it.
- A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta-analysis of QTLs for Fusarium wilt resistance.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Pooled it
- Genetic diversity and population structure analysis of cotton (Gossypium hirsutum L.) genotypes using DArTseq technology.BMC genomics · 2026Article
- Transcriptome dynamics along with expression analysis of key genes involved in fiber development between Gossypium barbadense and Gossypium darwinii.BMC plant biology · 2025Article
- Genome-Wide Association Study of Lint Percentage inInternational journal of molecular sciences · 2023Article
- Genome-wide characterization of trichome birefringence-like genes provides insights into fiber yield improvement.Frontiers in plant science · 2023Article
- Identification of superior parents with high fiber quality using molecular markers and phenotypes based on a core collection of upland cotton (Molecular breeding : new strategies in plant improvement · 2022Article
- Association analysis of germination level cold stress tolerance and candidate gene identification in Upland cotton (Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Deltapine 15 contributes to the genomic architecture of modern upland cotton cultivars.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Genetic diversity and population structure analysis for morphological traits in upland cotton (Gossypium hirsutum L.).Journal of applied genetics · 2022Article
- Inheritance, QTLs, and Candidate Genes of Lint Percentage in Upland Cotton.Frontiers in genetics · 2022Review
- Genome-wide association mapping for agronomic traits in an 8-way Upland cotton MAGIC population by SLAF-seq.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Identification of Novel Marker-Trait Associations for Lint Yield Contributing Traits in Upland Cotton (Frontiers in plant science · 2021Article
- Article
- Genetic structure, gene flow pattern, and association analysis of superior germplasm resources in domesticated upland cotton (Plant diversity · 2020Article
- SSRMMD: A Rapid and Accurate Algorithm for Mining SSR Feature Loci and Candidate Polymorphic SSRs Based on Assembled Sequences.Frontiers in genetics · 2020Article
- Identification of QTLs for high grain yield and component traits in new plant types of rice.PloS one · 2020Article
- Unraveling candidate genes underlying biomass digestibility in elephant grass (Cenchrus purpureus).BMC plant biology · 2019Article
- Dissecting the genetic architecture of seed-cotton and lint yields in Upland cotton using genome-wide association mapping.Breeding science · 2019Article
- Identification of genomewide single-nucleotide polymorphisms associated with presummer, summer and autumn bolls in upland cotton.Journal of genetics · 2019Article
- Dissection of the genetic variation and candidate genes of lint percentage by a genome-wide association study in upland cotton.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2019Article
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10 authors.
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Abstract
Detecting QTLs (quantitative trait loci) that enhance cotton yield and fiber quality traits and accelerate breeding has been the focus of many cotton breeders. In the present study, 359 SSR (simple sequence repeat) markers were used for the association mapping of 241 Upland cotton collections. A total of 333 markers, representing 733 polymorphic loci, were detected. The average linkage disequilibrium (LD) decay distances were 8.58 cM (r2 > 0.1) and 5.76 cM (r2 > 0.2). 241 collections were arranged into two subgroups using STRUCTURE software. Mixed linear modeling (MLM) methods (with population structure (Q) and relative kinship matrix (K)) were applied to analyze four phenotypic datasets obtained from four environments (two different locations and two years). Forty-six markers associated with the number of bolls per plant (NB), boll weight (BW), lint percentage (LP), fiber length (FL), fiber strength (FS) and fiber micornaire value (FM) were repeatedly detected in at least two environments. Of 46 associated markers, 32 were identified as new association markers, and 14 had been previously reported in the literature. Nine association markers were near QTLs (at a distance of less than 1-2 LD decay on the reference map) that had been previously described. These results provide new useful markers for marker-assisted selection in breeding programs and new insights for understanding the genetic basis of Upland cotton yields and fiber quality traits at the whole-genome level.
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