Evidence map›Paper›PMID 25635677›Full record

ArticleNature communications2015

Macrotene chromosomes provide insights to a new mechanism of high-order gene amplification in eukaryotes.

Agnès Thierry, Varun Khanna, Sophie Créno, Ingrid Lafontaine, Laurence Ma, Christiane Bouchier, Bernard Dujon

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Agnès ThierryInstitut Pasteur, Unité de Génétique moléculaire des levures, CNRS UMR3525, Sorbonne Universités, UPMC, Univ. Paris 06 UFR927, 25, rue du Docteur Roux, F-75724 Paris, France.
Varun KhannaInstitut Pasteur, Unité de Génétique moléculaire des levures, CNRS UMR3525, Sorbonne Universités, UPMC, Univ. Paris 06 UFR927, 25, rue du Docteur Roux, F-75724 Paris, France.
Sophie CrénoInstitut Pasteur, Genomic platform, 28, rue du Docteur Roux, F-75724 Paris, France.
Ingrid LafontaineInstitut Pasteur, Unité de Génétique moléculaire des levures, CNRS UMR3525, Sorbonne Universités, UPMC, Univ. Paris 06 UFR927, 25, rue du Docteur Roux, F-75724 Paris, France.
Laurence MaInstitut Pasteur, Genomic platform, 28, rue du Docteur Roux, F-75724 Paris, France.
Christiane BouchierInstitut Pasteur, Genomic platform, 28, rue du Docteur Roux, F-75724 Paris, France.
Bernard DujonInstitut Pasteur, Unité de Génétique moléculaire des levures, CNRS UMR3525, Sorbonne Universités, UPMC, Univ. Paris 06 UFR927, 25, rue du Docteur Roux, F-75724 Paris, France.
Institut Pasteur · FRSorbonne Université · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Copy number variation of chromosomal segments is now recognized as a major source of genetic polymorphism within natural populations of eukaryotes, as well as a possible cause of genetic diseases in humans, including cancer, but its molecular bases remain incompletely understood. In the baker's yeast Saccharomyces cerevisiae, a variety of low-order amplifications (segmental duplications) were observed after adaptation to limiting environmental conditions or recovery from gene dosage imbalance, and interpreted in terms of replication-based mechanisms associated or not with homologous recombination. Here we show the emergence of novel high-order amplification structures, with corresponding overexpression of embedded genes, during evolution under favourable growth conditions of severely unfit yeast cells bearing genetically disabled genomes. Such events form massively extended chromosomes, which we propose to call macrotene, whose characteristics suggest the products of intrachromosomal rolling-circle type of replication structures, probably initiated by increased accidental template switches under important cellular stress conditions.

Indexed as

ChromosomesDNA Copy Number VariationsGene AmplificationSaccharomyces cerevisiae

Identifiers

PMID25635677
PMCPMC4317496
OpenAlexW2015209371

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.