Evidence map›Paper›PMID 25635455›Full record

ArticleCell2015

A ribonuclease coordinates siRNA amplification and mRNA cleavage during RNAi.

Hsin-Yue Tsai, Chun-Chieh G Chen, Darryl Conte, James J Moresco, Daniel A Chaves, Shohei Mitani, John R Yates, Ming-Daw Tsai, Craig C Mello

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 107 citations in OpenAlex.

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  13. Intraspecific variation in the duration of epigenetic inheritance.bioRxiv : the preprint server for biology · 2025
    Article
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  15. Review
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  18. The microRNAmicroPublication biology · 2025
    Article
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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 4 countries.

Hsin-Yue TsaiRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA; Institute of Biological Chemistry, Academia Sinica, Nankang, Taipei 115, Taiwan.
Chun-Chieh G ChenRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA.
Darryl ConteRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA.
James J MorescoDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Daniel A ChavesRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA; Instituto de Medicina Molecular, Faculdade de Medicina, Universidade de Lisboa, Avenida Professor Egas Moniz, 1649-028 Lisboa, Portugal.
Shohei MitaniCREST, Japan Science and Technology Agency and Department of Physiology, Tokyo Women's Medical University School of Medicine, Tokyo 162-8666, Japan.
John R YatesDepartment of Chemical Physiology, The Scripps Research Institute, La Jolla, CA 92037, USA.
Ming-Daw TsaiInstitute of Biological Chemistry, Academia Sinica, Nankang, Taipei 115, Taiwan.
Craig C MelloRNA Therapeutics Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA; Howard Hughes Medical Institute, University of Massachusetts Medical School, Worcester, MA 01605, USA. Electronic address: craig.mello@umassmed.edu.
University of Massachusetts Chan Medical School · USScripps Research Institute · USInstitute of Biological Chemistry, Academia Sinica · TWTokyo Women's Medical University · JP

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
RNA MEDIATED GENETIC INTERFERENCE IN C ELEGANSR01GM058800 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MELLO, CRAIG C · 1999 to 2014
$4.6M
RNA Mediated Genetic Interference in C. elegansR37GM058800 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MELLO, CRAIG C · 2015 to 2024
$3.7M
Genetic Regulation of the Response to Dietary RestrictionR01AG027463 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI DILLIN, ANDREW G · 2008 to 2012
$2.4M
Illumina Genome Analyzer IIx for UMass Deep Sequencing CoreS10RR027052 · NCRR · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI WOLFE, SCOT A · 2010 to 2010
$489k
Howard Hughes Medical InstituteNCRR NIH HHS 1S10RR027052NCRR NIH HHS 5P41RR011823NCRR NIH HHS P41 RR011823NCRR NIH HHS S10 RR027052NIA NIH HHS R01 AG027463NIA NIH HHS R01AG027463NIGMS NIH HHS 8P41GM103533NIGMS NIH HHS GM058800NIGMS NIH HHS P41 GM103533NIGMS NIH HHS R01 GM058800NIGMS NIH HHS R37 GM058800NIH HHS P40 OD010440
6 · The paper itself

Abstract

Effective silencing by RNA-interference (RNAi) depends on mechanisms that amplify and propagate the silencing signal. In some organisms, small-interfering RNAs (siRNAs) are amplified from target mRNAs by RNA-dependent RNA polymerase (RdRP). Both RdRP recruitment and mRNA silencing require Argonaute proteins, which are generally thought to degrade RNAi targets by directly cleaving them. However, in C. elegans, the enzymatic activity of the primary Argonaute, RDE-1, is not required for silencing activity. We show that RDE-1 can instead recruit an endoribonuclease, RDE-8, to target RNA. RDE-8 can cleave RNA in vitro and is needed for the production of 3' uridylated fragments of target mRNA in vivo. We also find that RDE-8 promotes RdRP activity, thereby ensuring amplification of siRNAs. Together, our findings suggest a model in which RDE-8 cleaves target mRNAs to mediate silencing, while generating 3' uridylated mRNA fragments to serve as templates for the RdRP-directed amplification of the silencing signal.

Indexed as

Amino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCytoplasmic GranulesEndoribonucleasesMolecular Sequence DataRibonuclease IIIRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA InterferenceRNA, MessengerRNA, Small InterferingSequence AlignmentCaenorhabditis elegans ProteinsEndoribonucleasesrde-1 protein, C elegansRDE-8 protein, C elegansRibonuclease IIIRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, MessengerRNA, Small Interfering

Identifiers

PMID25635455
PMCPMC4318647
OpenAlexW2021160410

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.