Evidence map›Paper›PMID 25635274›Full record

ArticleMicrobiology (Reading, England)2015

RNases J1 and J2 are critical pleiotropic regulators in Streptococcus mutans.

Xi Chen, Nan Liu, Sharukh Khajotia, Fengxia Qi, Justin Merritt

Open access · greenAbstract read
In one paragraph

Article in Microbiology (Reading, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Specific host translation perturbations promote TnbioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Characterization of the Nicotinamide Adenine Dinucleotide Biosynthesis Pathway and Regulatory Mechanisms in Streptococcus mutans.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
  4. Article
  5. Structural and biochemical characteristics of twoThe Journal of biological chemistry · 2020
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Identification of New Degrons inFrontiers in microbiology · 2017
    Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xi ChenDepartment of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.
Nan LiuDepartment of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.
Sharukh KhajotiaDepartment of Dental Materials, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.
Fengxia QiDepartment of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA Division of Oral Biology, University of Oklahoma Health Sciences Center, OK 73104, USA.
Justin MerrittDepartment of Microbiology and Immunology, University of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA Division of Oral Biology, University of Oklahoma Health Sciences Center, OK 73104, USA merrittj@ohsu.edu.
University of Oklahoma Health Sciences Center · US

Funding

The IrvA-Dependent Pathway: A Link Between Stress Adaptation and VirulenceR01DE018893 · NIDCR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI MERRITT, JUSTIN · 2009 to 2018
$3.0M
The LytTR Regulatory Systems of Streptococcus mutansR01DE022083 · NIDCR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI MERRITT, JUSTIN · 2013 to 2016
$1.5M
Function of adhesins in veillonellae's role as keystone species in biofilm dysbiosisR15DE019940 · NIDCR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI KHAJOTIA, SHARUKH S · 2009 to 2015
$1.0M
Degradation of Nanoscale Topography of Resin Restorations by Oral Biofilm GrowthR15DE019566 · NIDCR · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI KHAJOTIA, SHARUKH S · 2009 to 2009
$220k
NIDCR NIH HHS DE018893NIDCR NIH HHS DE019566NIDCR NIH HHS DE019940NIDCR NIH HHS DE022083NIDCR NIH HHS R01 DE018893NIDCR NIH HHS R01 DE022083NIDCR NIH HHS R15 DE019566NIDCR NIH HHS R15 DE019940
6 · The paper itself

Abstract

In recent years, it has become increasingly evident that post-transcriptional control mechanisms are the principal source of gene regulation for a large number of prokaryotic genetic pathways, particularly those involved in virulence and environmental adaptation. Post-transcriptional regulation is largely governed by RNA stability, which itself is determined by target accessibility to RNase degradation. In most Firmicutes species, mRNA stability is strongly impacted by the activity of two recently discovered RNases referred to as RNase J1 and RNase J2. Little is known about RNase J1 function in bacteria and even less is known about RNase J2. In the current study, we mutated both RNase J orthologues in Streptococcus mutans to determine their functional roles in the cell. Single and double RNase J mutants were viable, but grew very slowly on agar plates. All of the mutants shared substantial defects in growth, morphology, acid tolerance, natural competence and biofilm formation. However, most of these defects were more severe in the RNase J2 mutant. Phenotypic suppression results also implicate a role for RNase J2 as a regulator of RNase J1 function. Unlike Bacillus subtilis, RNase J2 is a major pleiotropic regulator in S. mutans, which indicates some fundamental differences from B. subtilis in global gene regulation. Key conserved residues among the RNase J2 orthologues of lactic acid bacteria may hint at a greater role for RNase J2 in these species.

Indexed as

Adaptation, BiologicalAmino Acid SequenceBase SequenceBiofilmsEndoribonucleasesGenetic LociMicrobial ViabilityMolecular Sequence DataMutationPhenotypeStreptococcus mutansStress, PhysiologicalEndoribonucleases

Identifiers

PMID25635274
PMCPMC4857446
OpenAlexW2054003933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.