Evidence map›Paper›PMID 25635018›Full record

ArticleGenome announcements2015

Complete Genome Sequence of Yersinia ruckeri Strain CSF007-82, Etiologic Agent of Red Mouth Disease in Salmonid Fish.

Michael C Nelson, Scott E LaPatra, Timothy J Welch, Joerg Graf

Open access · diamondAbstract read
In one paragraph

Article in Genome announcements, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Seasonal Mortality of Wild Atlantic Menhaden (Transboundary and emerging diseases · 2024
    Article
  2. Article
  3. Article
  4. Phylogenetic Relatedness and Genome Structure ofFrontiers in microbiology · 2021
    Article
  5. Article
  6. pYR4 From a Norwegian Isolate ofFrontiers in cellular and infection microbiology · 2018
    Article
  7. Article
  8. Review
  9. Article
  10. Whole genome analysis ofMicrobial genomics · 2016
    Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Michael C NelsonDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA.ORCID http://orcid.org/0000-0002-9042-5904
Scott E LaPatraClear Spring Foods, Inc., Research Division, Buhl, Idaho, USA.
Timothy J WelchNational Center for Cool and Cold Water Aquaculture, Agricultural Research Service, U.S. Department of Agriculture, Kearneysville, West Virginia, USA tim.welch@ars.usda.gov joerg.graf@uconn.edu.
Joerg GrafDepartment of Molecular and Cell Biology, University of Connecticut, Storrs, Connecticut, USA tim.welch@ars.usda.gov joerg.graf@uconn.edu.
University of Connecticut · USNational Center for Cool and Cold Water Aquaculture · USTyson Foods (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present the complete, closed, and finished chromosomal and extrachromosomal genome sequences of Yersinia ruckeri strain CSF007-82, the etiologic agent of enteric red mouth disease in salmonid fish. The chromosome is 3,799,036 bp with a G+C content of 47.5% and encodes 3,530 predicted coding sequences (CDS), 7 ribosomal operons, and 80 tRNAs.

Identifiers

PMID25635018
PMCPMC4319512
OpenAlexW2122102365

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.