Evidence map›Paper›PMID 25634076›Full record

ArticleHuman genetics2015

Differential positive selection of malaria resistance genes in three indigenous populations of Peninsular Malaysia.

Xuanyao Liu, Yushimah Yunus, Dongsheng Lu, Farhang Aghakhanian, Woei-Yuh Saw, Lian Deng, Mohammad Ali, Xu Wang, Fadzilah Mohd Nor, Fadzilah Ghazali and 8 more

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Article in Human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Xuanyao LiuNUS Graduate School for Integrative Science and Engineering, National University of Singapore, Singapore, 117456, Singapore.
Yushimah Yunus
Dongsheng Lu
Farhang Aghakhanian
Woei-Yuh Saw
Lian Deng
Mohammad Ali
Xu Wang
Fadzilah Mohd Nor
Fadzilah Ghazali
Thuhairah Abdul Rahman
Shahrul Azlin Shaari
Mohd Zaki Salleh
Maude E Phipps
Rick Twee-Hee Ong
Shuhua Xu
Yik-Ying Teo
Boon-Peng Hoh

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The indigenous populations from Peninsular Malaysia, locally known as Orang Asli, continue to adopt an agro-subsistence nomadic lifestyle, residing primarily within natural jungle habitats. Leading a hunter-gatherer lifestyle in a tropical jungle environment, the Orang Asli are routinely exposed to malaria. Here we surveyed the genetic architecture of individuals from four Orang Asli tribes with high-density genotyping across more than 2.5 million polymorphisms. These tribes reside in different geographical locations in Peninsular Malaysia and belong to three main ethno-linguistic groups, where there is minimal interaction between the tribes. We first dissect the genetic diversity and admixture between the tribes and with neighboring urban populations. Later, by implementing five metrics, we investigated the genome-wide signatures for positive natural selection of these Orang Asli, respectively. Finally, we searched for evidence of genomic adaptation to the pressure of malaria infection. We observed that different evolutionary responses might have emerged in the different Orang Asli communities to mitigate malaria infection.

Indexed as

Selection, GeneticAdaptation, BiologicalCadherinsDisease Resistancefas ReceptorGenome-Wide Association StudyHeme Oxygenase-1HumansLymphotoxin-alphaMalariaMalaysiaNitric Oxide Synthase Type IIPolymorphism, Single NucleotidePopulation GroupsTranscriptomeTumor Necrosis Factor-alphaCadherinsFAS protein, humanfas ReceptorH-cadherinHeme Oxygenase-1HMOX1 protein, humanLymphotoxin-alphaNitric Oxide Synthase Type IINOS2 protein, humanTumor Necrosis Factor-alpha

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.