Evidence map›Paper›PMID 25633985›Full record

ArticlePLoS genetics2015

The role of the mammalian DNA end-processing enzyme polynucleotide kinase 3'-phosphatase in spinocerebellar ataxia type 3 pathogenesis.

Arpita Chatterjee, Saikat Saha, Anirban Chakraborty, Anabela Silva-Fernandes, Santi M Mandal, Andreia Neves-Carvalho, Yongping Liu, Raj K Pandita, Muralidhar L Hegde, Pavana M Hegde and 7 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 97 citations in OpenAlex.

  1. Article
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  4. Review
  5. Review
  6. Fructose-2,6-bisphosphate restores DNA repair activity of PNKP and ameliorates neurodegenerative symptoms in Huntington's disease.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  19. DNA Double-Strand Breaks as Pathogenic Lesions in Neurological Disorders.International journal of molecular sciences · 2022
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Arpita ChatterjeeDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, Texas, United States of America.
Saikat SahaDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, Texas, United States of America.
Anirban ChakrabortyDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, Texas, United States of America.
Anabela Silva-FernandesSchool of Health Sciences, Life and Health Sciences Research Institute (ICVS), University of Minho, Braga, Portugal; ICVS/3B's-PT Government Associate Laboratory, Braga/Guimarães, Portugal.
Santi M MandalDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, Texas, United States of America.
Andreia Neves-CarvalhoSchool of Health Sciences, Life and Health Sciences Research Institute (ICVS), University of Minho, Braga, Portugal; ICVS/3B's-PT Government Associate Laboratory, Braga/Guimarães, Portugal.
Yongping LiuDepartment of Neurology and Neuroscience and Cell Biology, University of Texas Medical Branch, Galveston, Texas, United States of America.
Raj K PanditaDepartment of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America; Department of Radiation Oncology, The Houston Methodist Research Institute, Houston, Texas, United States of America.
Muralidhar L HegdeDepartment of Radiation Oncology, The Houston Methodist Research Institute, Houston, Texas, United States of America; Department of Biochemistry & Molecular Biology, University of Texas Medical Branch, Galveston, Texas, United States of America.
Pavana M HegdeDepartment of Radiation Oncology, The Houston Methodist Research Institute, Houston, Texas, United States of America; Department of Biochemistry & Molecular Biology, University of Texas Medical Branch, Galveston, Texas, United States of America.
Istvan BoldoghDepartment of Microbiology & Immunology; University of Texas Medical Branch, Galveston, Texas, United States of America.
Tetsuo AshizawaDepartment of Neurology, University of Florida, Gainesville, Florida, United States of America.
Arnulf H KoeppenDepartment of Neurology, Albany Stratton VA Medical Center, Albany, New York, United States of America.
Tej K PanditaDepartment of Radiation Oncology, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America; Department of Radiation Oncology, The Houston Methodist Research Institute, Houston, Texas, United States of America.
Patricia MacielSchool of Health Sciences, Life and Health Sciences Research Institute (ICVS), University of Minho, Braga, Portugal; ICVS/3B's-PT Government Associate Laboratory, Braga/Guimarães, Portugal.
Partha S SarkarDepartment of Neurology and Neuroscience and Cell Biology, University of Texas Medical Branch, Galveston, Texas, United States of America.
Tapas K HazraDepartment of Internal Medicine, University of Texas Medical Branch, Galveston, Texas, United States of America.
The University of Texas Medical Branch at Galveston · USHouston Methodist · USUniversity of Minho · PTAlbany Stratton VA Medical Center Albany · USUniversity of Florida · US

Funding

Virus, Tissue Culture and ImmunoassayP01AI062885 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI CASOLA, ANTONELLA · 2005 to 2022
$23.9M
Synthetic Organic Chemistry CoreP30ES006676 · NIEHS · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI ELFERINK, CORNELIS JOHAN · 1995 to 2017
$21.7M
Preferential single-strand break repair in the active genes of mammalian cellsR01NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2012 to 2021
$3.3M
CHROMATIN MODIFYING FACTORS CONTROL RADIATION RESPONSE AND GENOMIC STABILITYR01CA129537 · NCI · WASHINGTON UNIVERSITY · PI PANDITA, TEJ K · 2008 to 2018
$3.3M
Tumor-cell-specific targets for combined hyperthermia and radiation effectsR01CA154320 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI PANDITA, TEJ K · 2010 to 2014
$1.6M
Linkage of Lung Inflammation to 8-oxoguanine and OGG1R01ES018948 · NIEHS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BOLDOGH, ISTVAN STEVEN · 2010 to 2014
$1.5M
NCI NIH HHS CA129537NCI NIH HHS CA154320NCI NIH HHS R01 CA129537NCI NIH HHS R01 CA154320NIAID NIH HHS AI062885NIAID NIH HHS P01 AI062885NIEHS NIH HHS P30 ES006676NIEHS NIH HHS P30 ES 06676NIEHS NIH HHS R01 ES018948NINDS NIH HHS NS073976NINDS NIH HHS R01 NS073976
6 · The paper itself

Abstract

DNA strand-breaks (SBs) with non-ligatable ends are generated by ionizing radiation, oxidative stress, various chemotherapeutic agents, and also as base excision repair (BER) intermediates. Several neurological diseases have already been identified as being due to a deficiency in DNA end-processing activities. Two common dirty ends, 3'-P and 5'-OH, are processed by mammalian polynucleotide kinase 3'-phosphatase (PNKP), a bifunctional enzyme with 3'-phosphatase and 5'-kinase activities. We have made the unexpected observation that PNKP stably associates with Ataxin-3 (ATXN3), a polyglutamine repeat-containing protein mutated in spinocerebellar ataxia type 3 (SCA3), also known as Machado-Joseph Disease (MJD). This disease is one of the most common dominantly inherited ataxias worldwide; the defect in SCA3 is due to CAG repeat expansion (from the normal 14-41 to 55-82 repeats) in the ATXN3 coding region. However, how the expanded form gains its toxic function is still not clearly understood. Here we report that purified wild-type (WT) ATXN3 stimulates, and by contrast the mutant form specifically inhibits, PNKP's 3' phosphatase activity in vitro. ATXN3-deficient cells also show decreased PNKP activity. Furthermore, transgenic mice conditionally expressing the pathological form of human ATXN3 also showed decreased 3'-phosphatase activity of PNKP, mostly in the deep cerebellar nuclei, one of the most affected regions in MJD patients' brain. Finally, long amplicon quantitative PCR analysis of human MJD patients' brain samples showed a significant accumulation of DNA strand breaks. Our results thus indicate that the accumulation of DNA strand breaks due to functional deficiency of PNKP is etiologically linked to the pathogenesis of SCA3/MJD.

Indexed as

AnimalsAtaxin-3Cell LineDNA DamageDNA RepairDNA Repair EnzymesHumansMachado-Joseph DiseaseMammalsMiceMice, TransgenicMutationNerve Tissue ProteinsNuclear ProteinsOxidative StressPhosphorylationAtaxin-3ATXN3 protein, humanDNA Repair EnzymesNerve Tissue ProteinsNuclear ProteinsPhosphotransferases (Alcohol Group Acceptor)PNKP protein, humanRepressor Proteins

Identifiers

PMID25633985
PMCPMC4310589
OpenAlexW2012040132

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.