ArticleScientific reports2015
Global-scale computational analysis of genomic sequences reveals the recombination pattern and coevolution dynamics of cereal-infecting geminiviruses.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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11 citing papers in PubMed, 31 citations in OpenAlex.
- Article
- Molecular characterization of wheat dwarf virus isolates from Serbia based on complete genome sequences.Frontiers in microbiology · 2024Article
- Molecular evolution and phylogeographic analysis of wheat dwarf virus.Frontiers in microbiology · 2024Article
- The Past, Present, and Future of Wheat Dwarf Virus Management-A Review.Plants (Basel, Switzerland) · 2023Review
- Comparative Genome Analysis of Old World and New World TYLCV Reveals a Biasness toward Highly Variable Amino Acids in Coat Protein.Plants (Basel, Switzerland) · 2023Article
- Development of Highly Efficient Resistance toInternational journal of molecular sciences · 2023Article
- Twenty years of evolution and diversification of digitaria streak virus in Digitaria setigera.Virus evolution · 2021Article
- Development of loop-mediated isothermal amplification assay for rapid detection of genetically different wheat dwarf virus isolates.Molecular biology reports · 2020Article
- Monoclonal Antibody-Based Serological Detection Methods for Wheat Dwarf Virus.Virologica Sinica · 2018Article
- Phylogenetic analysis of Wheat dwarf virus isolates from Iran.Virus genes · 2017Article
- Wheat Dwarf Virus as a Modulator of Multi-Stress Responses in Wheat.Physiologia plantarumReview
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Authors and funding
6 authors at 3 institutions in 4 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genetic diversity and recombination patterns were evaluated for 229 isolates of Wheat dwarf virus (WDV), which are important cereal-infecting geminiviruses. Recombination hot spots were concentrated at the boundary of the genes encoding for the replication protein (Rep), the coat protein (cp) and the movement protein (mp), as well as inside Rep and cp and in the short intergenic regions (SIR). Phylogenomic analyses confirmed that the global population of WDV clustered into two groups according to their specific host: wheat and barley, and the crucial regions for the division of two groups were mp and the large intergenic regions (LIR). The computationally inferred pattern of coevolution between amino acid residues and the predicted 3D structure for the viral proteins provided further differences among the strains or species at the genome and protein level. Pervasive interaction between Rep and Rep A proteins in WDV-wheat-specific group reflected their important and complex function in the replication and transcription of WDV. Furthermore, significant predicted interactions between CP and Rep and CP and Rep A proteins in the WDV-wheat-specific group are thought to be crucial for successful encapsidation and movement of the virus during infection.
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