Evidence map›Paper›PMID 25631353›Full record

ArticleJournal of biomolecular NMR2015

13C NMR detects conformational change in the 100-kD membrane transporter ClC-ec1.

Sherwin J Abraham, Ricky C Cheng, Thomas A Chew, Chandra M Khantwal, Corey W Liu, Shimei Gong, Robert K Nakamoto, Merritt Maduke

Open access · greenAbstract read
In one paragraph

Article in Journal of biomolecular NMR, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Structural basis of pH-dependent activation in a CLC transporter.Nature structural & molecular biology · 2024
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Multiscale Kinetic Modeling Reveals an Ensemble of ClJournal of the American Chemical Society · 2018
    Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. NMR studies of membrane proteins.Journal of biomolecular NMR · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Sherwin J AbrahamDepartment of Molecular & Cellular Physiology, Stanford University School of Medicine, 279 Campus Drive West, Stanford, CA, 94305, USA.
Ricky C Cheng
Thomas A Chew
Chandra M Khantwal
Corey W Liu
Shimei Gong
Robert K Nakamoto
Merritt Maduke
Stanford University · USUniversity of Virginia · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007365 · NIGMS · STANFORD UNIVERSITY · PI CHUA, KATRIN F · 1985 to 2021
$33.8M
Synthetic Antigen Binder CoreU54GM087519 · NIGMS · UNIVERSITY OF CHICAGO · PI ZHOU, MING · 2010 to 2017
$31.9M
NMR instrumentation: Stanford core facility 800 MHz consoleS10RR025612 · NCRR · STANFORD UNIVERSITY · PI PUGLISI, JOSEPH D · 2010 to 2010
$446k
NCRR NIH HHS 1 S10 RR025612-01A1NCRR NIH HHS S10 RR025612NIGMS NIH HHS T32 GM007365NIGMS NIH HHS T32GM007365NIGMS NIH HHS U54 GM087519NIGMS NIH HHS U54-GM087519
6 · The paper itself

Abstract

CLC transporters catalyze the exchange of Cl(-) for H(+) across cellular membranes. To do so, they must couple Cl(-) and H(+) binding and unbinding to protein conformational change. However, the sole conformational changes distinguished crystallographically are small movements of a glutamate side chain that locally gates the ion-transport pathways. Therefore, our understanding of whether and how global protein dynamics contribute to the exchange mechanism has been severely limited. To overcome the limitations of crystallography, we used solution-state (13)C-methyl NMR with labels on methionine, lysine, and engineered cysteine residues to investigate substrate (H(+)) dependent conformational change outside the restraints of crystallization. We show that methyl labels in several regions report H(+)-dependent spectral changes. We identify one of these regions as Helix R, a helix that extends from the center of the protein, where it forms the part of the inner gate to the Cl(-)-permeation pathway, to the extracellular solution. The H(+)-dependent spectral change does not occur when a label is positioned just beyond Helix R, on the unstructured C-terminus of the protein. Together, the results suggest that H(+) binding is mechanistically coupled to closing of the intracellular access-pathway for Cl(-).

Indexed as

AntiportersCarbon-13 Magnetic Resonance SpectroscopyCarbon RadioisotopesChloride-Bicarbonate AntiportersCrystallography, X-RayCysteineEscherichia coliEscherichia coli ProteinsLysineMethionineMethylationModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationProtein Structure, TertiaryAntiportersCarbon RadioisotopesChloride-Bicarbonate AntiportersCLC-ec1 protein, E coliCysteineEscherichia coli ProteinsLysineMethionine

Identifiers

PMID25631353
PMCPMC4398623
OpenAlexW2033591252

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.