Evidence map›Paper›PMID 25631048›Full record

ArticleThe Journal of biological chemistry2015

The Groucho-associated phosphatase PPM1B displaces Pax transactivation domain interacting protein (PTIP) to switch the transcription factor Pax2 from a transcriptional activator to a repressor.

Saji Abraham, Raghavendra Paknikar, Samina Bhumbra, Danny Luan, Rohan Garg, Gregory R Dressler, Sanjeevkumar R Patel

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Identification of HN252 as a potent inhibitor of protein phosphatase PPM1B.Journal of cellular and molecular medicine · 2020
    Article
  10. Review
  11. Epigenetic regulation of renal development.Seminars in cell & developmental biology · 2019
    Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Saji AbrahamFrom the Departments of Internal Medicine and.
Raghavendra PaknikarFrom the Departments of Internal Medicine and.
Samina BhumbraFrom the Departments of Internal Medicine and.
Danny LuanFrom the Departments of Internal Medicine and.
Rohan GargFrom the Departments of Internal Medicine and.
Gregory R DresslerPathology, University of Michigan, Ann Arbor, Michigan 48109.
Sanjeevkumar R PatelFrom the Departments of Internal Medicine and sanjeevk@umich.edu.
University of Michigan–Ann Arbor · US

Funding

Research Supplement to Promote Diversity in Health Related ResearchR01DK054740 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DRESSLER, GREGORY R · 1999 to 2024
$9.0M
Epigenetic Regulation of Kidney DevelopmentR01DK073722 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DRESSLER, GREGORY R · 2006 to 2020
$4.6M
SHORT-TERM TRAINING IN HEALTH PROF SCHOOLST35HL007690 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI FLAHERTY, KEVIN R · 1990 to 2024
$3.3M
Cell Signaling in Developing EpitheliaR01DK062914 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI DRESSLER, GREGORY R · 2003 to 2010
$1.8M
Mechanism of Gene Repression in the KidneyR01DK082409 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PATEL, SANJEEVKUMAR R · 2009 to 2013
$1.5M
NHLBI NIH HHS T35 HL007690NIDDK NIH HHS DK054740NIDDK NIH HHS DK073722NIDDK NIH HHS DK082409NIDDK NIH HHS R01 DK054740NIDDK NIH HHS R01 DK062914NIDDK NIH HHS R01 DK073722NIDDK NIH HHS R01 DK082409
6 · The paper itself

Abstract

Pax genes encode developmental regulatory proteins that specify cell lineages and tissues in metazoans. Upon binding to DNA through the conserved paired domain, Pax proteins can recruit both activating and repressing complexes that imprint distinct patterns of histone methylation associated with either gene activation or silencing. How the switch from Pax-mediated activation to repression is regulated remains poorly understood. In this report, we identify the phosphatase PPM1B as an essential component of the Groucho4 repressor complex that is recruited by Pax2 to chromatin. PPM1B can dephosphorylate the Pax2 activation domain and displace the adaptor protein PTIP, thus inhibiting H3K4 methylation and gene activation. Loss of PPM1B prevents Groucho-mediated gene repression. Thus, PPM1B helps switch Pax2 from a transcriptional activator to a repressor protein. This can have profound implications for developmental regulation by Pax proteins and suggests a model for imprinting specific epigenetic marks depending on the availability of co-factors.

Indexed as

Gene SilencingTranscriptional ActivationCarrier ProteinsChromatinDNA-Binding ProteinsHEK293 CellsHumansNuclear ProteinsPAX2 Transcription FactorPhosphoprotein PhosphatasesProtein Interaction MapsProtein Phosphatase 2CRepressor ProteinsCarrier ProteinsChromatinDNA-Binding ProteinsNuclear ProteinsPAX2 Transcription FactorPAXIP1 protein, humanPhosphoprotein PhosphatasesPPM1A protein, humanPPM1B protein, humanPPM1G protein, humanProtein Phosphatase 2CRepressor ProteinsTLE4 protein, humanEpigeneticsGrouchoPaxPhosphatasePPM1BProtein Phosphatase 2C (PP2C)TranscriptionTranscription CorepressorTranscription Factor

Identifiers

PMID25631048
PMCPMC4358138
OpenAlexW2014221662

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.