Evidence map›Paper›PMID 25631044›Full record

ArticleThe Journal of biological chemistry2015

Identification of Coq11, a new coenzyme Q biosynthetic protein in the CoQ-synthome in Saccharomyces cerevisiae.

Christopher M Allan, Agape M Awad, Jarrett S Johnson, Dyna I Shirasaki, Charles Wang, Crysten E Blaby-Haas, Sabeeha S Merchant, Joseph A Loo, Catherine F Clarke

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

  1. Article
  2. In defence of ferroptosis.Signal transduction and targeted therapy · 2025
    Review
  3. Understanding coenzyme Q.Physiological reviews · 2024
    Review
  4. Article
  5. Primary Coenzyme Q10 Deficiency: An Update.Antioxidants (Basel, Switzerland) · 2023
    Review
  6. Biosynthesis, Deficiency, and Supplementation of Coenzyme Q.Antioxidants (Basel, Switzerland) · 2023
    Review
  7. Identification of novel coenzyme QThe Journal of biological chemistry · 2023
    Article
  8. Coenzyme Q biochemistry and biosynthesis.Trends in biochemical sciences · 2023
    Review
  9. Article
  10. Article
  11. Review
  12. How plants synthesize coenzyme Q.Plant communications · 2022
    Review
  13. Review
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Disorders of Human Coenzyme Q10 Metabolism: An Overview.International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Christopher M AllanFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute.
Agape M AwadFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute.
Jarrett S JohnsonFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute.
Dyna I ShirasakiFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute.
Charles WangFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute.
Crysten E Blaby-HaasFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute.
Sabeeha S MerchantFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute, the UCLA/DOE Institute for Genomics and Proteomics, University of California, Los Angeles, California 90095.
Joseph A LooFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute, the Department of Biological Chemistry, and the UCLA/DOE Institute for Genomics and Proteomics, University of California, Los Angeles, California 90095.
Catherine F ClarkeFrom the Department of Chemistry and Biochemistry and the Molecular Biology Institute, cathy@chem.ucla.edu.

Funding

UCLA MSD ProgramR25GM055052 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BARBER, PAUL HENRY, HASSON, TAMA W. · 1996 to 2021
$9.2M
UV Laser for Photodissociation-Mass Spectrometry of Proteins and Protein ComplexesR01GM103479 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOO, JOSEPH A · 2012 to 2021
$3.2M
LC-Triple Quadrupole Mass Spectrometer to Enhance LIfe Sciences ResearchS10RR024605 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI LOO, JOSEPH A · 2007 to 2007
$424k
Dissection of the Molecular Details of Fe Deficiency AcclimationF32GM100753 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BLABY, CRYSTEN ELIZABETH · 2012 to 2014
$156k
NCRR NIH HHS S10 RR024605NCRR NIH HHS S10RR024605NIGMS NIH HHS F32 GM100753NIGMS NIH HHS GM100753NIGMS NIH HHS R01 GM103479NIGMS NIH HHS R01GM103479
6 · The paper itself

Abstract

Coenzyme Q (Q or ubiquinone) is a redox active lipid composed of a fully substituted benzoquinone ring and a polyisoprenoid tail and is required for mitochondrial electron transport. In the yeast Saccharomyces cerevisiae, Q is synthesized by the products of 11 known genes, COQ1-COQ9, YAH1, and ARH1. The function of some of the Coq proteins remains unknown, and several steps in the Q biosynthetic pathway are not fully characterized. Several of the Coq proteins are associated in a macromolecular complex on the matrix face of the inner mitochondrial membrane, and this complex is required for efficient Q synthesis. Here, we further characterize this complex via immunoblotting and proteomic analysis of tandem affinity-purified tagged Coq proteins. We show that Coq8, a putative kinase required for the stability of the Q biosynthetic complex, is associated with a Coq6-containing complex. Additionally Q6 and late stage Q biosynthetic intermediates were also found to co-purify with the complex. A mitochondrial protein of unknown function, encoded by the YLR290C open reading frame, is also identified as a constituent of the complex and is shown to be required for efficient de novo Q biosynthesis. Given its effect on Q synthesis and its association with the biosynthetic complex, we propose that the open reading frame YLR290C be designated COQ11.

Indexed as

Chromatography, LiquidProteomicsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTandem Mass SpectrometryUbiquinoneCoq11 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsUbiquinoneCoenzyme QImmunoprecipitationMass Spectrometry (MS)Mitochondrial MetabolismProtein ComplexProteomicsQ Biosynthetic IntermediatesSaccharomyces cerevisiaeUbiquinoneYeast

Identifiers

PMID25631044
PMCPMC4367260

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.