Evidence map›Paper›PMID 25630935›Full record

ReviewEcoHealth2016

Genetic Adaptation of Influenza A Viruses in Domestic Animals and Their Potential Role in Interspecies Transmission: A Literature Review.

Olga Munoz, Marco De Nardi, Karen van der Meulen, Kristien van Reeth, Marion Koopmans, Kate Harris, Sophie von Dobschuetz, Gudrun Freidl, Adam Meijer, Andrew Breed and 13 more

Erratum issuedAbstract readReview
PubMed Publisher
In one paragraph

Review in EcoHealth, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

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  5. Diversity and evolution of the animal virome.Nature reviews. Microbiology · 2022
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 6 countries.

Olga MunozDivision of Comparative Biomedical Sciences, OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, OIE Collaborating Centre for Diseases at the Human-Animal Interface, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Universita 10, 35020, Legnaro, PD, Italy. munozolgasvetlana@gmail.com.
Marco De NardiDivision of Comparative Biomedical Sciences, OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, OIE Collaborating Centre for Diseases at the Human-Animal Interface, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Universita 10, 35020, Legnaro, PD, Italy.
Karen van der MeulenLaboratory of Virology, Faculty of Veterinary Medicine, Ghent University, Ghent, Belgium.
Kristien van ReethLaboratory of Virology, Faculty of Veterinary Medicine, Ghent University, Ghent, Belgium.
Marion KoopmansLaboratory for Infectious Diseases Research, Diagnostics and Screening (IDS), National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Kate HarrisAnimal Health and Veterinary Agency (AHVLA), Surrey, UK.
Sophie von DobschuetzRoyal Veterinary College (RVC), London, UK.
Gudrun FreidlLaboratory for Infectious Diseases Research, Diagnostics and Screening (IDS), National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Adam MeijerLaboratory for Infectious Diseases Research, Diagnostics and Screening (IDS), National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Andrew BreedAnimal Health and Veterinary Agency (AHVLA), Surrey, UK.
Andrew HillAnimal Health and Veterinary Agency (AHVLA), Surrey, UK.
Rowena KosmiderAnimal Health and Veterinary Agency (AHVLA), Surrey, UK.
Jill BanksAnimal Health and Veterinary Agency (AHVLA), Surrey, UK.
Katharina D C StärkRoyal Veterinary College (RVC), London, UK.
Barbara WielandRoyal Veterinary College (RVC), London, UK.
Kim StevensRoyal Veterinary College (RVC), London, UK.
Sylvie van der WerfUnit of Molecular Genetics of RNA viruses, National Influenza Center (Northern France), Institut Pasteur, UMR3569 CNRS, University Paris Diderot Sorbonne Paris Cité, Paris, France.
Vincent EnoufUnit of Molecular Genetics of RNA viruses, National Influenza Center (Northern France), Institut Pasteur, UMR3569 CNRS, University Paris Diderot Sorbonne Paris Cité, Paris, France.
Gwenaelle DauphinFood and Agricultural Organization of the United Nations (FAO), Rome, Italy.
William DundonDivision of Comparative Biomedical Sciences, OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, OIE Collaborating Centre for Diseases at the Human-Animal Interface, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Universita 10, 35020, Legnaro, PD, Italy.
Giovanni CattoliDivision of Comparative Biomedical Sciences, OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, OIE Collaborating Centre for Diseases at the Human-Animal Interface, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Universita 10, 35020, Legnaro, PD, Italy.
Ilaria CapuaDivision of Comparative Biomedical Sciences, OIE/FAO and National Reference Laboratory for Newcastle Disease and Avian Influenza, OIE Collaborating Centre for Diseases at the Human-Animal Interface, Istituto Zooprofilattico Sperimentale delle Venezie, Viale dell'Universita 10, 35020, Legnaro, PD, Italy.
FLURISK Consortium
Animal and Plant Health Agency · GBRoyal Veterinary College · GBNational Institute for Public Health and the Environment · NLGhent University · BECentre National de la Recherche Scientifique · FRFood and Agriculture Organization of the United Nations · ITInstitut Pasteur · FRSafoso (Switzerland) · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In December 2011, the European Food Safety Authority awarded a Grant for the implementation of the FLURISK project. The main objective of FLURISK was the development of an epidemiological and virological evidence-based influenza risk assessment framework (IRAF) to assess influenza A virus strains circulating in the animal population according to their potential to cross the species barrier and cause infections in humans. With the purpose of gathering virological data to include in the IRAF, a literature review was conducted and key findings are presented here. Several adaptive traits have been identified in influenza viruses infecting domestic animals and a significance of these adaptations for the emergence of zoonotic influenza, such as shift in receptor preference and mutations in the replication proteins, has been hypothesized. Nonetheless, and despite several decades of research, a comprehensive understanding of the conditions that facilitate interspecies transmission is still lacking. This has been hampered by the intrinsic difficulties of the subject and the complexity of correlating environmental, viral and host factors. Finding the most suitable and feasible way of investigating these factors in laboratory settings represents another challenge. The majority of the studies identified through this review focus on only a subset of species, subtypes and genes, such as influenza in avian species and avian influenza viruses adapting to humans, especially in the context of highly pathogenic avian influenza H5N1. Further research applying a holistic approach and investigating the broader influenza genetic spectrum is urgently needed in the field of genetic adaptation of influenza A viruses.

Indexed as

AnimalsAnimals, DomesticDisease OutbreaksHumansInfluenza A virusInfluenza, HumanOrthomyxoviridae Infectionsadaptationdogshorsesinfluenzapoultryswine

Identifiers

PMID25630935
OpenAlexW2045718638

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.