Evidence map›Paper›PMID 25627683›Full record

ArticleThe Journal of biological chemistry2015

G-quadruplexes significantly stimulate Pif1 helicase-catalyzed duplex DNA unwinding.

Xiao-Lei Duan, Na-Nv Liu, Yan-Tao Yang, Hai-Hong Li, Ming Li, Shuo-Xing Dou, Xu-Guang Xi

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 47 citations in OpenAlex.

  1. Dynamic Assemblies in Genome Maintenance.Advances in experimental medicine and biology · 2026
    Review
  2. The Role of SF1 and SF2 Helicases in Biotechnological Applications.Applied biochemistry and biotechnology · 2024
    Review
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  15. Structure and function of Pif1 helicase.Biochemical Society transactions · 2017
    Review
  16. Review
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Xiao-Lei DuanFrom the College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
Na-Nv LiuFrom the College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
Yan-Tao YangFrom the College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
Hai-Hong LiFrom the College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China.
Ming Lithe CAS Key Laboratory of Soft Matter Physics, International Associated Laboratory of CNRS-Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China, and.
Shuo-Xing Douthe CAS Key Laboratory of Soft Matter Physics, International Associated Laboratory of CNRS-Institute of Physics, Chinese Academy of Sciences, Beijing 100190, China, and sxdou@iphy.ac.cn.
Xu-Guang XiFrom the College of Life Sciences, Northwest A & F University, Yangling, Shaanxi 712100, China, the Laboratoire de Biologie et Pharmacologie Appliquée, Ecole Normale Supérieure de Cachan, CNRS, 61 Avenue du Président Wilson, 94235 Cachan, France xxi01@ens-cachan.fr.
Northwest A&F University · CNChinese Academy of Sciences · CNInstitute of Physics · CNLaboratoire de Biologie et Pharmacologie Appliquée · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The evolutionarily conserved G-quadruplexes (G4s) are faithfully inherited and serve a variety of cellular functions such as telomere maintenance, gene regulation, DNA replication initiation, and epigenetic regulation. Different from the Watson-Crick base-pairing found in duplex DNA, G4s are formed via Hoogsteen base pairing and are very stable and compact DNA structures. Failure of untangling them in the cell impedes DNA-based transactions and leads to genome instability. Cells have evolved highly specific helicases to resolve G4 structures. We used a recombinant nuclear form of Saccharomyces cerevisiae Pif1 to characterize Pif1-mediated DNA unwinding with a substrate mimicking an ongoing lagging strand synthesis stalled by G4s, which resembles a replication origin and a G4-structured flap in Okazaki fragment maturation. We find that the presence of G4 may greatly stimulate the Pif1 helicase to unwind duplex DNA. Further studies reveal that this stimulation results from G4-enhanced Pif1 dimerization, which is required for duplex DNA unwinding. This finding provides new insights into the properties and functions of G4s. We discuss the observed activation phenomenon in relation to the possible regulatory role of G4s in the rapid rescue of the stalled lagging strand synthesis by helping the replicator recognize and activate the replication origin as well as by quickly removing the G4-structured flap during Okazaki fragment maturation.

Indexed as

G-QuadruplexesBase SequenceBiocatalysisDNADNA HelicasesKineticsMolecular Sequence DataNucleic Acid ConformationSpectrometry, FluorescenceDNADNA HelicasesDNA HelicaseDNA ReplicationGenomic InstabilityG-quadruplexKineticsReplication Origin

Identifiers

PMID25627683
PMCPMC4367274
OpenAlexW2150285221

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.