Evidence map›Paper›PMID 25627216›Full record

ArticlePlant physiology2015

SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and other transcription factors are involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 expression.

Mutsutomo Tokizawa, Yuriko Kobayashi, Tatsunori Saito, Masatomo Kobayashi, Satoshi Iuchi, Mika Nomoto, Yasuomi Tada, Yoshiharu Y Yamamoto, Hiroyuki Koyama

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
22.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 145 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. CaNature communications · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. SlSTOP1-regulatedHorticulture research · 2024
    Article
  10. Review
  11. Review
  12. Article
  13. STOP1-regulatedPlant direct · 2024
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Two Sweet Sorghum (International journal of molecular sciences · 2023
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Mutsutomo TokizawaApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan.
Yuriko KobayashiApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan.
Tatsunori SaitoApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan.
Masatomo KobayashiApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan.
Satoshi IuchiApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan.
Mika NomotoApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan.
Yasuomi TadaApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan.
Yoshiharu Y YamamotoApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan koyama@gifu-u.ac.jp yyy@gifu-u.ac.jp.
Hiroyuki KoyamaApplied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan koyama@gifu-u.ac.jp yyy@gifu-u.ac.jp.
Gifu University · JPNagoya University · JPRIKEN BioResource Research Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Arabidopsis (Arabidopsis thaliana) the root apex is protected from aluminum (Al) rhizotoxicity by excretion of malate, an Al chelator, by ALUMINUM-ACTIVATED MALATE TRANSPORTER1 (AtALMT1). AtALMT1 expression is fundamentally regulated by the SENSITIVE TO PROTON RHIZOTOXICITY1 (STOP1) zinc finger protein, but other transcription factors have roles that enable Al-inducible expression with a broad dynamic range. In this study, we characterized multiple cis-elements in the AtALMT1 promoter that interact with transcription factors. In planta complementation assays of AtALMT1 driven by 5' truncated promoters of different lengths showed that the promoter region between -540 and 0 (the first ATG) restored the Al-sensitive phenotype of atalm1 and thus contains cis-elements essential for AtALMT1 expression for Al tolerance. Computation of overrepresented octamers showed that eight regions in this promoter region contained potential cis-elements involved in Al induction and STOP1 regulation. Mutation in a position around -297 from the first ATG completely inactivated AtALMT1 expression and Al response. In vitro binding assays showed that this region contained the STOP1 binding site, which accounted for the recognition by four zinc finger domains of the protein. Other positions were characterized as cis-elements that regulated expression by repressors and activators and a transcription factor that determines root tip expression of AtALMT1. From the consensus of known cis-elements, we identified CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR2 to be an activator of AtALMT1 expression. Al-inducible expression of AtALMT1 changed transcription starting sites, which increased the abundance of transcripts with a shortened 5' untranslated region. The present analyses identified multiple mechanisms that regulate AtALMT1 expression.

Indexed as

Adaptation, PhysiologicalAluminumArabidopsisArabidopsis ProteinsBase SequenceGene Expression ProfilingGene Expression Regulation, PlantGenetic Complementation TestGlucuronidaseModels, BiologicalMolecular Sequence DataMutationOrganic Anion TransportersPlants, Genetically ModifiedPromoter Regions, GeneticProtein BindingALMT1 protein, ArabidopsisAluminumArabidopsis ProteinsGlucuronidaseOrganic Anion TransportersRNA, MessengerSTOP1 protein, ArabidopsisTranscription Factors

Identifiers

PMID25627216
PMCPMC4348791
OpenAlexW2063208390

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.