Evidence map›Paper›PMID 25627066›Full record

ArticleThe Plant cell2015

Light-activated phytochrome A and B interact with members of the SPA family to promote photomorphogenesis in Arabidopsis by reorganizing the COP1/SPA complex.

David J Sheerin, Chiara Menon, Sven zur Oven-Krockhaus, Beatrix Enderle, Ling Zhu, Philipp Johnen, Frank Schleifenbaum, York-Dieter Stierhof, Enamul Huq, Andreas Hiltbrunner

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 168 papers.

0numbers the graph read from it
0cells of the map it votes in
168citing papers in PubMed
52.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

168 citing papers in PubMed, 342 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Review
  7. Review
  8. Plant direct · 2026
    Article
  9. Article
  10. Article
  11. Plants (Basel, Switzerland) · 2026
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. A NAC family geneHorticulture research · 2025
    Article
  17. Review
  18. Review
  19. Article
  20. Article

108 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

David J SheerinFaculty of Biology, University of Freiburg, 79104 Freiburg, Germany.
Chiara MenonFaculty of Biology, University of Freiburg, 79104 Freiburg, Germany Center for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany.
Sven zur Oven-KrockhausCenter for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany Institute of Physical and Theoretical Chemistry, University of Tübingen, 72076 Tübingen, Germany.
Beatrix EnderleFaculty of Biology, University of Freiburg, 79104 Freiburg, Germany.
Ling ZhuDepartment of Molecular Biosciences and The Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas 78712.
Philipp JohnenCenter for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany.
Frank SchleifenbaumCenter for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany Institute of Physical and Theoretical Chemistry, University of Tübingen, 72076 Tübingen, Germany.
York-Dieter StierhofCenter for Plant Molecular Biology, University of Tübingen, 72076 Tübingen, Germany.
Enamul HuqDepartment of Molecular Biosciences and The Institute for Cellular and Molecular Biology, The University of Texas at Austin, Austin, Texas 78712.ORCID http://orcid.org/0000-0001-7692-5139
Andreas HiltbrunnerFaculty of Biology, University of Freiburg, 79104 Freiburg, Germany BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg, Germany andreas.hiltbrunner@biologie.uni-freiburg.de.
University of Freiburg · DEUniversity of Tübingen · DEThe University of Texas at Austin · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytochromes function as red/far-red photoreceptors in plants and are essential for light-regulated growth and development. Photomorphogenesis, the developmental program in light, is the default program in seed plants. In dark-grown seedlings, photomorphogenic growth is suppressed by the action of the CONSTITUTIVELY PHOTOMORPHOGENIC1 (COP1)/SUPPRESSOR OF phyA-105 (SPA) complex, which targets positive regulators of photomorphogenic growth for degradation by the proteasome. Phytochromes inhibit the COP1/SPA complex, leading to the accumulation of transcription factors promoting photomorphogenesis; yet, the mechanism by which they inactivate COP1/SPA is still unknown. Here, we show that light-activated phytochrome A (phyA) and phytochrome B (phyB) interact with SPA1 and other SPA proteins. Fluorescence resonance energy transfer-fluorescence lifetime imaging microscopy analyses show that SPAs and phytochromes colocalize and interact in nuclear bodies. Furthermore, light-activated phyA and phyB disrupt the interaction between COP1 and SPAs, resulting in reorganization of the COP1/SPA complex in planta. The light-induced stabilization of HFR1, a photomorphogenic factor targeted for degradation by COP1/SPA, correlates temporally with the accumulation of phyA in the nucleus and localization of phyA to nuclear bodies. Overall, these data provide a molecular mechanism for the inactivation of the COP1/SPA complex by phyA- and phyB-mediated light perception.

Indexed as

ArabidopsisArabidopsis ProteinsFluorescence Resonance Energy TransferGene Expression Regulation, PlantPhytochrome APhytochrome BProtein BindingArabidopsis ProteinsPhytochrome APhytochrome B

Identifiers

PMID25627066
PMCPMC4330587
OpenAlexW2152793376

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.