Evidence map›Paper›PMID 25626881›Full record

ArticleScientific reports2015

Draft genome sequence of adzuki bean, Vigna angularis.

Yang Jae Kang, Dani Satyawan, Sangrea Shim, Taeyoung Lee, Jayern Lee, Won Joo Hwang, Sue K Kim, Puji Lestari, Kularb Laosatit, Kil Hyun Kim and 10 more

Abstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Functional Genomics: From Soybean to Legume.International journal of molecular sciences · 2025
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Progress in Adzuki Bean Seed Coat Colour Studies.Plants (Basel, Switzerland) · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Yang Jae KangDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Dani SatyawanDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Sangrea ShimDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Taeyoung LeeDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Jayern LeeDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Won Joo HwangDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Sue K KimDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Puji LestariIndonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development (ICABIOGRAD-IAARD), Jalan Tentara Pelajar No. 3A Bogor 16111, Indonesia.
Kularb LaosatitProgram in Plant Breeding, Faculty of Agriculture at Kamphaeng Saen, Kasetsart University, Kamphaeng Saen, Nakhon Pathom 73140, Thailand.
Kil Hyun KimNational Institute of Crop Science, Rural Development Administration, Suwon, 441-857, Korea.
Tae Joung HaResearch Policy Bureau, R&D Performance Evaluation &Management Division, Nongsaengmyeong-ro 300, Wansan-gu, Junju, 560-500, Korea.
Annapurna ChitikineniInternational Crops Research Institute for the Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.
Moon Young KimDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Jong-Min KoSoybean Research Team, Legume &Oil Crop Research Division, Jeompiljae-ro 20, Miryang, Gyeongnamdo, 627-803, Korea.
Jae-Gyun GwagNational Agrobiodiversity Center of NAAS, RDA, SuwonxGyeongnamdo, Korea.
Jung-Kyung MoonNational Institute of Crop Science, Rural Development Administration, Suwon, 441-857, Korea.
Yeong-Ho LeeDepartment of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea.
Beom-Seok ParkAgricultural Genome Center, National Academy of Agricultural Science, Rural Development Administration, Suwon, 441-707, Korea.
Rajeev K VarshneyInternational Crops Research Institute for the Semi-Arid Tropics, Patancheru, Andhra Pradesh, India.
Suk-Ha Lee1] Department of Plant Science and Research Institute for Agriculture and Life Sciences, Seoul National University, Seoul 151-921, Korea [2] Plant Genomics and Breeding Institute, Seoul National University, Seoul, 151-921, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adzuki bean (Vigna angularis var. angularis) is a dietary legume crop in East Asia. The presumed progenitor (Vigna angularis var. nipponensis) is widely found in East Asia, suggesting speciation and domestication in these temperate climate regions. Here, we report a draft genome sequence of adzuki bean. The genome assembly covers 75% of the estimated genome and was mapped to 11 pseudo-chromosomes. Gene prediction revealed 26,857 high confidence protein-coding genes evidenced by RNAseq of different tissues. Comparative gene expression analysis with V. radiata showed that the tissue specificity of orthologous genes was highly conserved. Additional re-sequencing of wild adzuki bean, V. angularis var. nipponensis, and V. nepalensis, was performed to analyze the variations between cultivated and wild adzuki bean. The determined divergence time of adzuki bean and the wild species predated archaeology-based domestication time. The present genome assembly will accelerate the genomics-assisted breeding of adzuki bean.

Indexed as

Genome, PlantBiological EvolutionChromosome MappingFabaceaePolymorphism, Single NucleotideQuantitative Trait Loci

Identifiers

PMID25626881
PMCPMC5389050

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.