Evidence map›Paper›PMID 25626169›Full record

ArticleeLife2015

Enhanced stability and polyadenylation of select mRNAs support rapid thermogenesis in the brown fat of a hibernator.

Katharine R Grabek, Cecilia Diniz Behn, Gregory S Barsh, Jay R Hesselberth, Sandra L Martin

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 35 citations in OpenAlex.

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  12. Shifts in metabolic fuel use coincide with maximal rates of ventilation and body surface rewarming in an arousing hibernator.American journal of physiology. Regulatory, integrative and comparative physiology · 2019
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  18. Differential expression and emerging functions of non-coding RNAs in cold adaptation.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Katharine R GrabekDepartment of Cell and Developmental Biology, University of Colorado School of Medicine, Aurora, United States.
Cecilia Diniz BehnDepartment of Applied Math and Statistics, Colorado School of Mines, Golden, United States.
Gregory S BarshDepartment of Research, HudsonAlpha Institute for Biotechnology, Huntsville, United States.
Jay R HesselberthDepartment of Cell and Developmental Biology, University of Colorado School of Medicine, Aurora, United States.
Sandra L MartinDepartment of Cell and Developmental Biology, University of Colorado School of Medicine, Aurora, United States.
University of Colorado Denver · USColorado School of Mines · USHudsonAlpha Institute for Biotechnology · US

Funding

Colorado Clinical and Translational Sciences InstituteUL1TR001082 · NCATS · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2013 to 2017
$48.0M
Brown fat dynamics: elucidation of molecular drivers using hibernation as a modelR21DK095180 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI MARTIN, SANDRA L · 2012 to 2013
$412k
NCATS NIH HHS UL1 TR001082NIDDK NIH HHS R21 DK095180NIDDK NIH HHS R21DK095180
6 · The paper itself

Abstract

During hibernation, animals cycle between torpor and arousal. These cycles involve dramatic but poorly understood mechanisms of dynamic physiological regulation at the level of gene expression. Each cycle, Brown Adipose Tissue (BAT) drives periodic arousal from torpor by generating essential heat. We applied digital transcriptome analysis to precisely timed samples to identify molecular pathways that underlie the intense activity cycles of hibernator BAT. A cohort of transcripts increased during torpor, paradoxical because transcription effectively ceases at these low temperatures. We show that this increase occurs not by elevated transcription but rather by enhanced stabilization associated with maintenance and/or extension of long poly(A) tails. Mathematical modeling further supports a temperature-sensitive mechanism to protect a subset of transcripts from ongoing bulk degradation instead of increased transcription. This subset was enriched in a C-rich motif and genes required for BAT activation, suggesting a model and mechanism to prioritize translation of key proteins for thermogenesis.

Indexed as

Adipose Tissue, BrownAnimalsArousalBase SequenceBody TemperatureGene LibraryHibernationModels, BiologicalMolecular Sequence AnnotationMolecular Sequence DataNucleotide MotifsPhenotypePolyadenylationRNA, MessengerRNA StabilitySciuridaeRNA, Messengerbiological oscillationdigital transcriptomeevolutionary biologygenomicsIctidomys tridecemlineatusnon-shivering thermogenesis

Identifiers

PMID25626169
PMCPMC4383249
OpenAlexW2059635626

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.