Evidence map›Paper›PMID 25626148›Full record

ArticleViruses2015

In search of pathogens: transcriptome-based identification of viral sequences from the pine processionary moth (Thaumetopoea pityocampa).

Agata K Jakubowska, Remziye Nalcacioglu, Anabel Millán-Leiva, Alejandro Sanz-Carbonell, Hacer Muratoglu, Salvador Herrero, Zihni Demirbag

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
7.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Diversity of RNA viruses in agricultural insects.Computational and structural biotechnology journal · 2023
    Review
  4. Review
  5. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Agata K JakubowskaDepartment of Genetics, Universitat de València, Dr Moliner 50, 46100 Burjassot, Spain. agatajak@gmail.com.
Remziye NalcaciogluDepartment of Biology, Faculty of Sciences, Karadeniz Technical University, 61080 Trabzon, Turkey. zihni.demirbag@ktu.edu.tr.
Anabel Millán-LeivaInstituto de Hortofruticultura Subtropical y Mediterránea "La Mayora" (IHSM-UMA-CSIC), Consejo Superior de Investigaciones Científicas, Estación Experimental "La Mayora", Algarrobo-Costa, 29750 Málaga, Spain. anabel@eelm.csic.es.
Alejandro Sanz-CarbonellDepartment of Genetics, Universitat de València, Dr Moliner 50, 46100 Burjassot, Spain. alexsanzc@gmail.com.
Hacer MuratogluDepartment of Molecular Biology and Genetics, Faculty of Sciences, Karadeniz Technical University, 61080 Trabzon, Turkey. muratoglu@ktu.edu.tr.
Salvador HerreroDepartment of Genetics, Universitat de València, Dr Moliner 50, 46100 Burjassot, Spain. sherrero@uv.es.
Zihni DemirbagDepartment of Biology, Faculty of Sciences, Karadeniz Technical University, 61080 Trabzon, Turkey. zihni.demirbag@ktu.edu.tr.
Karadeniz Technical University · TRUniversitat de València · ESConsejo Superior de Investigaciones Científicas · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thaumetopoea pityocampa (pine processionary moth) is one of the most important pine pests in the forests of Mediterranean countries, Central Europe, the Middle East and North Africa. Apart from causing significant damage to pinewoods, T. pityocampa occurrence is also an issue for public and animal health, as it is responsible for dermatological reactions in humans and animals by contact with its irritating hairs. High throughput sequencing technologies have allowed the fast and cost-effective generation of genetic information of interest to understand different biological aspects of non-model organisms as well as the identification of potential pathogens. Using these technologies, we have obtained and characterized the transcriptome of T. pityocampa larvae collected in 12 different geographical locations in Turkey. cDNA libraries for Illumina sequencing were prepared from four larval tissues, head, gut, fat body and integument. By pooling the sequences from Illumina platform with those previously published using the Roche 454-FLX and Sanger methods we generated the largest reference transcriptome of T. pityocampa. In addition, this study has also allowed identification of possible viral pathogens with potential application in future biocontrol strategies.

Indexed as

MothsTranscriptomeVirusesAnimalsComputational BiologyGenes, ViralHigh-Throughput Nucleotide SequencingLarvaMolecular Sequence AnnotationPhylogenyTurkey

Identifiers

PMID25626148
PMCPMC4353898
OpenAlexW2147878945

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.