Evidence map›Paper›PMID 25625848›Full record

ArticleEpigenetics2014

Aberrant CpG methylation of the TFAP2A gene constitutes a mechanism for loss of TFAP2A expression in human metastatic melanoma.

Andrea R Hallberg, Sabine U Vorrink, Danielle R Hudachek, Kimberly Cramer-Morales, Mohammed M Milhem, Robert A Cornell, Frederick E Domann

Open access · bronzeAbstract read
In one paragraph

Article in Epigenetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. AberrantBiomedicines · 2023
    Article
  6. Review
  7. Article
  8. Review
  9. Article
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  11. Article
  12. Article
  13. Article
  14. Review
  15. KIT Suppresses BRAFCancer research · 2017
    Article
  16. Review
  17. Association between Promoter Methylation of Gene ERCC3 and Benzene Hematotoxicity.International journal of environmental research and public health · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Andrea R Hallberga Interdisciplinary Graduate Program in Molecular and Cellular Biology; Graduate College ; The University of Iowa ; Iowa City , IA USA ;
Sabine U Vorrink
Danielle R Hudachek
Kimberly Cramer-Morales
Mohammed M Milhem
Robert A Cornell
Frederick E Domann
University of Iowa · USCarver Bible College · US

Funding

Viral VectorP30CA086862 · NCI · UNIVERSITY OF IOWA · PI Douglas Robert Spitz · 2000 to 2026
$70.0M
Training CoreP42ES013661 · NIEHS · UNIVERSITY OF IOWA · PI HANS-JOACHIM LEHMLER · 2006 to 2026
$60.3M
TRAINING PROGRAM IN FREE RADICAL AND RADIATION BIOLOGYT32CA078586 · NCI · UNIVERSITY OF IOWA · PI SPITZ, DOUGLAS ROBERT · 1999 to 2024
$5.7M
Regulation of the Melanocyte Lineage by the AP2 Transcription Factor FamilyR01AR062547 · NIAMS · UNIVERSITY OF WASHINGTON · PI CORNELL, ROBERT AARON · 2013 to 2022
$3.8M
NCI NIH HHS P30 CA086862NCI NIH HHS T32 CA078586NIEHS NIH HHS P42 ES013661PHS HHS 5P30 086862-14
6 · The paper itself

Abstract

Metastatic melanoma is a deadly treatment-resistant form of skin cancer whose global incidence is on the rise. During melanocyte transformation and melanoma progression the expression profile of many genes changes. Among these, a gene implicated in several steps of melanocyte development, TFAP2A, is frequently silenced; however, the molecular mechanism of TFAP2A silencing in human melanoma remains unknown. In this study, we measured TFAP2A mRNA expression in primary human melanocytes compared to 11 human melanoma samples by quantitative real-time RT-PCR. In addition, we assessed CpG DNA methylation of the TFAP2A promoter in these samples using bisulfite sequencing. Compared to primary melanocytes, which showed high TFAP2A mRNA expression and no promoter methylation, human melanoma samples showed decreased TFAP2A mRNA expression and increased promoter methylation. We further show that increased CpG methylation correlates with decreased TFAP2A mRNA expression. Using The Cancer Genome Atlas, we further identified TFAP2A as a gene displaying among the most decreased expression in stage 4 melanomas vs. non-stage 4 melanomas, and whose CpG methylation was frequently associated with lack of mRNA expression. Based on our data, we conclude that TFAP2A expression in human melanomas can be silenced by aberrant CpG methylation of the TFAP2A promoter. We have identified aberrant CpG DNA methylation as an epigenetic mark associated with TFAP2A silencing in human melanoma that could have significant implications for the therapy of human melanoma using epigenetic modifying drugs.

Indexed as

CpG IslandsGene Expression Regulation, NeoplasticDNA MethylationEpigenesis, GeneticGene SilencingHumansMelanocytesMelanomaPromoter Regions, GeneticTranscription Factor AP-2TFAP2A protein, humanTranscription Factor AP-2DNA methylationepigenetic regulationgene expressionmetastatic melanomaqRT-PCR, quantitative real-time Reverse Transcription Polymerase Chain ReactionTCGA, The Cancer Genome AtlasTFAP2A, Transcription Factor Activating Enhancer Binding Protein 2 Alpha

Identifiers

PMID25625848
PMCPMC4622677
OpenAlexW2055199112

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.