Evidence map›Paper›PMID 25624462›Full record

SynthesisJournal of medical genetics2015

DCAF4, a novel gene associated with leucocyte telomere length.

Massimo Mangino, Lene Christiansen, Rivka Stone, Steven C Hunt, Kent Horvath, Dan T A Eisenberg, Masayuki Kimura, Inge Petersen, Jeremy D Kark, Utz Herbig and 21 more

Open access · hybridAbstract readMeta-Analysis
In one paragraph

Synthesis in Journal of medical genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 5 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 5 syntheses or guidelines pooled it, 77 citations in OpenAlex.

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  14. Association between leukocyte telomere length and COVID-19 severity.The Egyptian journal of medical human genetics · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 19 institutions in 6 countries.

Massimo ManginoDepartment of Twin Research and Genetic Epidemiology, King's College London, London, UK National Institute for Health Research (NIHR) Biomedical Research Centre at Guy's and St. Thomas' Foundation Trust, London, UK.
Lene ChristiansenEpidemiology Unit, The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark, Odense, Denmark Department of Clinical Genetics, and Department of Clinical Biochemistry and Pharmacology, Odense University Hospital, Odense, Denmark.
Rivka StoneCenter of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School, Newark, New Jersey, USA.
Steven C HuntCardiovascular Genetics Division, Department of Medicine, University of Utah, Salt Lake City, Utah, USA.
Kent HorvathCenter of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School, Newark, New Jersey, USA.
Dan T A EisenbergDepartment of Anthropology, University of Washington, Seattle, Washington, USA Center for Studies in Demography and Ecology, University of Washington, Seattle, Washington, USA.
Masayuki KimuraCenter of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School, Newark, New Jersey, USA.
Inge PetersenEpidemiology Unit, The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark, Odense, Denmark.
Jeremy D KarkEpidemiology Unit, Hebrew University-Hadassah School of Public Health and Community Medicine, Jerusalem, Israel.
Utz HerbigCenter of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School, Newark, New Jersey, USA.
Alex P ReinerDepartment of Epidemiology, University of Washington, Seattle, Washington, USA Public Health Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Athanase BenetosDepartment of Geriatrics, Universite de Lorraine INSERM U961, Nancy, France.
Veryan CoddDepartment of Cardiovascular Sciences, University of Leicester, Leicester, UK National Institute for Health Research (NIHR) Leicester Cardiovascular Biomedical Research Unit, Glenfield Hospital, Leicester, UK.
Dale R NyholtQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Ronit SinnreichEpidemiology Unit, Hebrew University-Hadassah School of Public Health and Community Medicine, Jerusalem, Israel.
Kaare ChristensenEpidemiology Unit, The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark, Odense, Denmark Department of Clinical Genetics, and Department of Clinical Biochemistry and Pharmacology, Odense University Hospital, Odense, Denmark.
Hisham NassarDepartment of Cardiology, Hadassah University Medical Center, Jerusalem, Israel.
Shih-Jen HwangPopulation Sciences Branch of the National Heart, Lung and Blood Institute, Bethesda, Maryland, USA The Framingham Heart Study, Framingham, Massachusetts, USA.
Daniel LevyPopulation Sciences Branch of the National Heart, Lung and Blood Institute, Bethesda, Maryland, USA The Framingham Heart Study, Framingham, Massachusetts, USA.
Veronique BatailleDepartment of Twin Research and Genetic Epidemiology, King's College London, London, UK Department of Dermatology, West Herts NHS Trust, Herts, UK.
Annette L FitzpatrickDepartment of Epidemiology, University of Washington, Seattle, Washington, USA.
Wei ChenCenter for Cardiovascular Health, Tulane University, New Orleans, Louisiana, USA.
Gerald S BerensonCenter for Cardiovascular Health, Tulane University, New Orleans, Louisiana, USA.
Nilesh J SamaniDepartment of Cardiovascular Sciences, University of Leicester, Leicester, UK National Institute for Health Research (NIHR) Leicester Cardiovascular Biomedical Research Unit, Glenfield Hospital, Leicester, UK.
Nicholas G MartinQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Sarah TishkoffDepartment of Genetics, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Nicholas J SchorkDepartment of Molecular and Experimental Medicine, The Scripps Research Institute, San Diego, California, USA.
Kirsten Ohm KyvikEpidemiology Unit, The Danish Aging Research Center and The Danish Twin Registry, Institute of Public Health, University of Southern Denmark, Odense, Denmark Institute of Regional Health Services Research, University of Southern Denmark, Odense, Denmark Odense Patient data Explorative Network (OPEN), Odense University Hospital, Odense, Denmark.
Christine DalgårdInstitute of Public Health, Environmental Medicine, University of Southern Denmark, Odense, Denmark.
Timothy D SpectorDepartment of Twin Research and Genetic Epidemiology, King's College London, London, UK.
Abraham AvivCenter of Human Development and Aging, Rutgers, The State University of New Jersey, New Jersey Medical School, Newark, New Jersey, USA.
University of Southern Denmark · DKRutgers New Jersey Medical SchoolHebrew University of Jerusalem · ILKing's College London · GBNational Heart Lung and Blood Institute · USQIMR Berghofer Medical Research Institute · AURutgers, The State University of New Jersey · USTulane University · USUniversity of Washington · USCentre Hospitalier Régional et Universitaire de Nancy · FRFred Hutch Cancer Center · USGuy's and St Thomas' NHS Foundation Trust · GBHadassah Medical Center · ILNational Institute for Health Research · GBOdense University Hospital · DKScripps Research Institute · USUniversity of Leicester · GBUniversity of Pennsylvania · USUniversity of Utah · US

Funding

Framingham Project/LevyZIAHL006001 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI LEVY, DANIEL · 2009 to 2025
$51.1M
HYPERGEN: GENETICS OF LEFT VENTRICULAR HYPERTROPHYR01HL055673 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI ARNETT, DONNA K · 1996 to 2016
$18.1M
EVOLUTION OF CARDIOVASCULAR RISK WITH NORMAL AGINGR01AG016592 · NIA · TULANE UNIVERSITY OF LOUISIANA · PI CHEN, WEI · 2000 to 2015
$11.7M
Exceptional Survival: Trajectories to Functional Aging (CHS All Stars)R01AG023629 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NEWMAN, ANNE B. · 2004 to 2016
$9.5M
CHARGE Consortium: Omics Discovery for CVD and Aging PhenotypesR01HL105756 · NHLBI · UNIVERSITY OF WASHINGTON · PI Bruce M Psaty, NICHOLAS L SMITH · 2011 to 2026
$9.5M
Methods and Data CoreR24HD042828 · NICHD · UNIVERSITY OF WASHINGTON · PI ELLIS, JOHN MARK · 2002 to 2016
$9.3M
The Family Blood Pressure Program (HyperGEN Network)U01HL054471 · NHLBI · UNIVERSITY OF UTAH · PI HUNT, STEVEN C. · 2000 to 2007
$7.4M
CHS Events Follow-up StudyR01HL080295 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M · 2009 to 2014
$6.3M
The Family Blood Pressure Program (Program Data Center)U01HL054473 · NHLBI · WASHINGTON UNIVERSITY · PI RAO, DABEERU C · 2000 to 2008
$5.8M
WGA Study to Identify Genetic Variants Associated with CV Events in CHSR01HL087652 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M · 2007 to 2009
$5.1M
CHS Events Follow-up StudyU01HL080295 · NHLBI · UNIVERSITY OF WASHINGTON · PI PSATY, BRUCE M · 2005 to 2008
$4.6M
NHLBI FAMILY BLOOD PRESSURE PROGRAM-HYPERGEN-MPLS FCU01HL054496 · NHLBI · UNIVERSITY OF MINNESOTA TWIN CITIES · PI PANKOW, JAMES S · 2000 to 2004
$3.2M
British Heart FoundationIntramural NIH HHSNHLBI NIH HHS HHSN268200800007CNHLBI NIH HHS HHSN268201200036CNHLBI NIH HHS HL055673NHLBI NIH HHS HL080295NHLBI NIH HHS HL087652NHLBI NIH HHS HL105756NHLBI NIH HHS HL54471NHLBI NIH HHS HL54472NHLBI NIH HHS HL54473NHLBI NIH HHS HL54495NHLBI NIH HHS HL54496NHLBI NIH HHS HL54509NHLBI NIH HHS HL54515NHLBI NIH HHS N01 HC025195NHLBI NIH HHS N01 HC055222NHLBI NIH HHS N01 HC085079NHLBI NIH HHS N01 HC085080NHLBI NIH HHS N01 HC085081NHLBI NIH HHS N01 HC085082NHLBI NIH HHS N01 HC085083NHLBI NIH HHS N01 HC085086NHLBI NIH HHS N01-HC-25195NHLBI NIH HHS R01 HL055673NHLBI NIH HHS R01 HL080295NHLBI NIH HHS R01 HL087652NHLBI NIH HHS R01 HL105756NHLBI NIH HHS R01 HL116446NHLBI NIH HHS U01 HL054471NHLBI NIH HHS U01 HL054472NHLBI NIH HHS U01 HL054473NHLBI NIH HHS U01 HL054495NHLBI NIH HHS U01 HL054496NHLBI NIH HHS U01 HL054509NHLBI NIH HHS U01 HL080295NHLBI NIH HHS U10 HL054471NHLBI NIH HHS U10 HL054472NHLBI NIH HHS U10 HL054473NHLBI NIH HHS U10 HL054495NHLBI NIH HHS U10 HL054496NHLBI NIH HHS U10 HL054509NIA NIH HHS 2R01AG016592NIA NIH HHS AG023629NIA NIH HHS R01 AG016592NIA NIH HHS R01 AG020132NIA NIH HHS R01 AG021593NIA NIH HHS R01 AG023629NIA NIH HHS R01 AG030678NIA NIH HHS R01AG030678NIA NIH HHS R01AG20132NIA NIH HHS R01AG21593NIA NIH HHS R56 AG023629NICHD NIH HHS R24 HD042828NIEHS NIH HHS 5R01ES021724NIEHS NIH HHS R01 ES021724NIGMS NIH HHS R01 GM113657Wellcome Trust
6 · The paper itself

Abstract

backgroundLeucocyte telomere length (LTL), which is fashioned by multiple genes, has been linked to a host of human diseases, including sporadic melanoma. A number of genes associated with LTL have already been identified through genome-wide association studies. The main aim of this study was to establish whether DCAF4 (DDB1 and CUL4-associated factor 4) is associated with LTL. In addition, using ingenuity pathway analysis (IPA), we examined whether LTL-associated genes in the general population might partially explain the inherently longer LTL in patients with sporadic melanoma, the risk for which is increased with ultraviolet radiation (UVR).

resultsGenome-wide association (GWA) meta-analysis and de novo genotyping of 20 022 individuals revealed a novel association (p=6.4×10(-10)) between LTL and rs2535913, which lies within DCAF4. Notably, eQTL analysis showed that rs2535913 is associated with decline in DCAF4 expressions in both lymphoblastoid cells and sun-exposed skin (p=4.1×10(-3) and 2×10(-3), respectively). Moreover, IPA revealed that LTL-associated genes, derived from GWA meta-analysis (N=9190), are over-represented among genes engaged in melanoma pathways. Meeting increasingly stringent p value thresholds (p<0.05, <0.01, <0.005, <0.001) in the LTL-GWA meta-analysis, these genes were jointly over-represented for melanoma at p values ranging from 1.97×10(-169) to 3.42×10(-24).

conclusionsWe uncovered a new locus associated with LTL in the general population. We also provided preliminary findings that suggest a link of LTL through genetic mechanisms with UVR and melanoma in the general population.

Indexed as

AllelesCarrier ProteinsGene Expression RegulationGenome-Wide Association StudyHumansLeukocytesMelanomaRisk FactorsTelomereTelomere HomeostasisCarrier ProteinsDCAF4 protein, humancancer: skinComplex traitsmelanomaTelomere

Identifiers

PMID25624462
PMCPMC4345921
OpenAlexW2130425995

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.