Evidence map›Paper›PMID 25624392›Full record

ArticleThe Journal of cell biology2015

A novel assay reveals preferential binding between Rabs, kinesins, and specific endosomal subpopulations.

Marvin Bentley, Helena Decker, Julie Luisi, Gary Banker

Abstract read
In one paragraph

Article in The Journal of cell biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

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  9. MARK2 phosphorylates KIF13A at a 14-3-3 binding site to polarize vesicular transport of transferrin receptor within dendrites.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  18. KIF13B mediates VEGFR2 recycling to modulate vascular permeability.Cellular and molecular life sciences : CMLS · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Marvin BentleyJungers Center for Neurosciences Research, Oregon Health & Science University, Portland, OR 97239.
Helena DeckerJungers Center for Neurosciences Research, Oregon Health & Science University, Portland, OR 97239.
Julie LuisiJungers Center for Neurosciences Research, Oregon Health & Science University, Portland, OR 97239.
Gary BankerJungers Center for Neurosciences Research, Oregon Health & Science University, Portland, OR 97239 bankerg@ohsu.edu.

Funding

Neuronal Polarity and Membrane TraffikingR01MH066179 · NIMH · RENSSELAER POLYTECHNIC INSTITUTE · PI BENTLEY, MARVIN · 2002 to 2017
$6.6M
NIMH NIH HHS MH066179NIMH NIH HHS R01 MH066179
6 · The paper itself

Abstract

Identifying the proteins that regulate vesicle trafficking is a fundamental problem in cell biology. In this paper, we introduce a new assay that involves the expression of an FKBP12-rapamycin-binding domain-tagged candidate vesicle-binding protein, which can be inducibly linked to dynein or kinesin. Vesicles can be labeled by any convenient method. If the candidate protein binds the labeled vesicles, addition of the linker drug results in a predictable, highly distinctive change in vesicle localization. This assay generates robust and easily interpretable results that provide direct experimental evidence of binding between a candidate protein and the vesicle population of interest. We used this approach to compare the binding of Kinesin-3 family members with different endosomal populations. We found that KIF13A and KIF13B bind preferentially to early endosomes and that KIF1A and KIF1Bβ bind preferentially to late endosomes and lysosomes. This assay may have broad utility for identifying the trafficking proteins that bind to different vesicle populations.

Indexed as

AnimalsBiological AssayCells, CulturedEndosomesHumansKinesinsProtein BindingProtein Structure, TertiaryProtein Transportrab GTP-Binding ProteinsRatsTransport VesiclesKinesinsrab GTP-Binding Proteins

Identifiers

PMID25624392
PMCPMC4315250

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.