Evidence map›Paper›PMID 25623622›Full record

ArticleJournal of microscopy2015

Developing 3D SEM in a broad biological context.

A Kremer, S Lippens, S Bartunkova, B Asselbergh, C Blanpain, M Fendrych, A Goossens, M Holt, S Janssens, M Krols and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of microscopy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
18.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 105 citations in OpenAlex.

  1. Review
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  9. The desmosome comes into focus.The Journal of cell biology · 2024
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  20. Volume electron microscopy: analyzing the lung.Histochemistry and cell biology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 6 countries.

A KremerVIB Bio Imaging Core, Gent, VIB, Technologiepark 927, Gent, B-9052, Belgium.
S LippensVIB Bio Imaging Core, Gent, VIB, Technologiepark 927, Gent, B-9052, Belgium.
S BartunkovaVIB Bio Imaging Core, Gent, VIB, Technologiepark 927, Gent, B-9052, Belgium.
B AsselberghVIB Department of Molecular Genetics, Antwerp University, Antwerpen 2020, Belgium.
C BlanpainIRIBHM, Université Libre de Bruxelles, Brussels, B-1070, Belgium.
M FendrychDepartment of Plant Systems Biology, VIB, Ghent, 9052, Belgium.
A GoossensDepartment of Plant Systems Biology, VIB, Ghent, 9052, Belgium.
M HoltCenter for the Biology of Disease, VIB, Leuven, Belgium.
S JanssensInflammation Research Center, VIB, Technologiepark 927, Gent, B-9052, Belgium.
M KrolsInflammation Research Center, VIB, Technologiepark 927, Gent, B-9052, Belgium.
J-C LarsimontIRIBHM, Université Libre de Bruxelles, Brussels, B-1070, Belgium.
C Mc GuireInflammation Research Center, VIB, Technologiepark 927, Gent, B-9052, Belgium.
M K NowackDepartment of Plant Systems Biology, VIB, Ghent, 9052, Belgium.
X SaelensInflammation Research Center, VIB, Technologiepark 927, Gent, B-9052, Belgium.
A SchertelCarl Zeiss Microscopy, GmbH, Oberkochen, Germany.
B SchepensInflammation Research Center, VIB, Technologiepark 927, Gent, B-9052, Belgium.
M SlezakCenter for the Biology of Disease, VIB, Leuven, Belgium.
V TimmermanVIB Department of Molecular Genetics, Antwerp University, Antwerpen 2020, Belgium.
C TheunisDepartment of Intensive Care, Leiden University Medical Center, Leiden, The Netherlands.
R VAN BremptDepartment of Intensive Care, Leiden University Medical Center, Leiden, The Netherlands.
Y VisserDepartment of Intensive Care, Leiden University Medical Center, Leiden, The Netherlands.
C J GuérinVIB Bio Imaging Core, Gent, VIB, Technologiepark 927, Gent, B-9052, Belgium.
Ghent University · BEJohnson & Johnson (United States) · USVIB-UAntwerp Center for Molecular Neurology · BEUniversité Libre de Bruxelles · BEVIB-KU Leuven Center for Cancer Biology · BECarl Zeiss (Germany) · DEInstitute of Science and Technology Austria · ATUniversity College Ghent · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

When electron microscopy (EM) was introduced in the 1930s it gave scientists their first look into the nanoworld of cells. Over the last 80 years EM has vastly increased our understanding of the complex cellular structures that underlie the diverse functions that cells need to maintain life. One drawback that has been difficult to overcome was the inherent lack of volume information, mainly due to the limit on the thickness of sections that could be viewed in a transmission electron microscope (TEM). For many years scientists struggled to achieve three-dimensional (3D) EM using serial section reconstructions, TEM tomography, and scanning EM (SEM) techniques such as freeze-fracture. Although each technique yielded some special information, they required a significant amount of time and specialist expertise to obtain even a very small 3D EM dataset. Almost 20 years ago scientists began to exploit SEMs to image blocks of embedded tissues and perform serial sectioning of these tissues inside the SEM chamber. Using first focused ion beams (FIB) and subsequently robotic ultramicrotomes (serial block-face, SBF-SEM) microscopists were able to collect large volumes of 3D EM information at resolutions that could address many important biological questions, and do so in an efficient manner. We present here some examples of 3D EM taken from the many diverse specimens that have been imaged in our core facility. We propose that the next major step forward will be to efficiently correlate functional information obtained using light microscopy (LM) with 3D EM datasets to more completely investigate the important links between cell structures and their functions.

Indexed as

AnimalsBrainElectron Microscope TomographyHistocytological Preparation TechniquesImaging, Three-DimensionalLungMiceMicroscopy, ElectronMicroscopy, Electron, ScanningMicrotomyPlant RootsCorrelative light and electron microscopyfocused ion beam scanning electron microscopysample preparationserial block-face scanning electron microscopy

Identifiers

PMID25623622
PMCPMC4670703
OpenAlexW1891270766

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.