Evidence map›Paper›PMID 25622614›Full record

ArticleJournal of bacteriology2015

Deletion of a 77-base-pair inverted repeat element alters the synthesis of surface polysaccharides in Porphyromonas gingivalis.

Brian W Bainbridge, Takanori Hirano, Nicole Grieshaber, Mary E Davey

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Markerless gene deletion inMicrobiology spectrum · 2026
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  5. AFrontiers in oral health · 2021
    Article
  6. Article
  7. The Role of Exopolysaccharides in Oral Biofilms.Journal of dental research · 2019
    Review
  8. Article
  9. Review
  10. Genes Contributing toFrontiers in cellular and infection microbiology · 2017
    Article
  11. Synthesis of Sphingolipids Impacts Survival ofFrontiers in microbiology · 2016
    Article
  12. Review
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Brian W BainbridgeDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Takanori HiranoDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA.
Nicole GrieshaberDepartment of Biological Sciences, University of Idaho, Moscow, Idaho, USA.
Mary E DaveyDepartment of Oral Biology, University of Florida, Gainesville, Florida, USA mdavey@dental.ufl.edu.
University of Florida · USUniversity of Idaho · US

Funding

Regulatory Mechanisms Controlling Expression of P. gingivalis Surface StructuresR01DE019117 · NIDCR · UNIVERSITY OF FLORIDA · PI DAVEY, MARY ELLEN · 2009 to 2019
$4.5M
Identification of mRNA targets of small regulatory RNAs in P. gingivalisR21DE023924 · NIDCR · UNIVERSITY OF IDAHO · PI GRIESHABER, NICOLE · 2014 to 2015
$416k
NIDCR NIH HHS R01 DE019117NIDCR NIH HHS R01DE019117NIDCR NIH HHS R21 DE023924NIDCR NIH HHS R21DE023924
6 · The paper itself

Abstract

unlabelledBacterial cell surface glycans, such as capsular polysaccharides and lipopolysaccharides (LPS), influence host recognition and are considered key virulence determinants. The periodontal pathogen Porphyromonas gingivalis is known to display at least three different types of surface glycans: O-LPS, A-LPS, and K-antigen capsule. We have shown that PG0121 (in strain W83) encodes a DNABII histone-like protein and that this gene is transcriptionally linked to the K-antigen capsule synthesis genes, generating a large ∼19.4-kb transcript (PG0104-PG0121). Furthermore, production of capsule is deficient in a PG0121 mutant strain. In this study, we report on the identification of an antisense RNA (asRNA) molecule located within a 77-bp inverted repeat (77bpIR) element located near the 5' end of the locus. We show that overexpression of this asRNA decreases the amount of capsule produced, indicating that this asRNA can impact capsule synthesis in trans. We also demonstrate that deletion of the 77bpIR element and thereby synthesis of the large 19.4-kb transcript also diminishes, but does not eliminate, capsule synthesis. Surprisingly, LPS structures were also altered by deletion of the 77bpIR element, and reactivity to monoclonal antibodies specific to both O-LPS and A-LPS was eliminated. Additionally, reduced reactivity to these antibodies was also observed in a PG0106 mutant, indicating that this putative glycosyltransferase, which is required for capsule synthesis, is also involved in LPS synthesis in strain W83. We discuss our finding in the context of how DNABII proteins, an antisense RNA molecule, and the 77bpIR element may modulate expression of surface polysaccharides in P. gingivalis. IMPORTANCE: The periodontal pathogen Porphyromonas gingivalis displays at least three different types of cell surface glycans: O-LPS, A-LPS, and K-antigen capsule. We have shown using Northern analysis that the K-antigen capsule locus encodes a large transcript (∼19.4 kb), encompassing a 77-bp inverted repeat (77bpIR) element near the 5' end. Here, we report on the identification of an antisense RNA (asRNA) encoded within the 77bpIR. We show that overexpression of this asRNA or deletion of the element decreases the amount of capsule. LPS structures were also altered by deletion of the 77bpIR, and reactivity to monoclonal antibodies to both O-LPS and A-LPS was eliminated. Our data indicate that the 77bpIR element is involved in modulating both LPS and capsule synthesis in P. gingivalis.

Indexed as

Bacterial CapsulesGene Expression Regulation, BacterialLipopolysaccharidesMutationPolysaccharides, BacterialPorphyromonas gingivalisReproducibility of ResultsTranscriptomeLipopolysaccharidesPolysaccharides, Bacterial

Identifiers

PMID25622614
PMCPMC4352660
OpenAlexW2121320348

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.