Evidence map›Paper›PMID 25621974›Full record

ArticlePLoS genetics2015

No evidence for association of autism with rare heterozygous point mutations in Contactin-Associated Protein-Like 2 (CNTNAP2), or in Other Contactin-Associated Proteins or Contactins.

John D Murdoch, Abha R Gupta, Stephan J Sanders, Michael F Walker, John Keaney, Thomas V Fernandez, Michael T Murtha, Samuel Anyanwu, Gordon T Ober, Melanie J Raubeson and 10 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 54 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. GABAergic System Dysfunction in Autism Spectrum Disorders.Frontiers in cell and developmental biology · 2021
    Review
  7. Article
  8. Article
  9. Latrophilin's Social Protein Network.Frontiers in neuroscience · 2019
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Journal of experimental neuroscience · 2018
    Article
  15. Article
  16. Review
  17. IntragenicMolecular syndromology · 2017
    Review
  18. Article
  19. Review
  20. Sex-specific gene-environment interactions underlying ASD-like behaviors.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 1 country.

John D MurdochYale University Department of Genetics, New Haven, Connecticut, United States of America.
Abha R GuptaYale University Child Study Center, New Haven, Connecticut, United States of America; Yale University Department of Pediatrics, New Haven, Connecticut, United States of America.
Stephan J SandersYale University Department of Genetics, New Haven, Connecticut, United States of America; University of California, San Francisco, Department of Psychiatry, San Francisco, California, United States of America.
Michael F WalkerUniversity of California, San Francisco, Department of Psychiatry, San Francisco, California, United States of America.
John KeaneyYale College, New Haven, Connecticut, United States of America.
Thomas V FernandezYale University Child Study Center, New Haven, Connecticut, United States of America.
Michael T MurthaYale University Child Study Center, New Haven, Connecticut, United States of America.
Samuel AnyanwuYale University Child Study Center, New Haven, Connecticut, United States of America.
Gordon T OberYale University Child Study Center, New Haven, Connecticut, United States of America.
Melanie J RaubesonYale University Child Study Center, New Haven, Connecticut, United States of America.
Nicholas M DiLulloYale University Child Study Center, New Haven, Connecticut, United States of America.
Natalie VillaUCLA David Geffen School of Medicine, Los Angeles, California, United States of America.
Zainabdul WaqarYale University Child Study Center, New Haven, Connecticut, United States of America.
Catherine SullivanYale University Child Study Center, New Haven, Connecticut, United States of America.
Luis GonzalezYale University Child Study Center, New Haven, Connecticut, United States of America.
A Jeremy WillseyYale University Department of Genetics, New Haven, Connecticut, United States of America; University of California, San Francisco, Department of Psychiatry, San Francisco, California, United States of America.
So-Yeon ChoeUCLA School of Law, Los Angeles, California, United States of America.
Benjamin M NealeBroad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America; Analytic and Translational Genetics Unit, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, United States of America.
Mark J DalyBroad Institute of Harvard and MIT, Cambridge, Massachusetts, United States of America; Analytic and Translational Genetics Unit, Department of Medicine, Massachusetts General Hospital and Harvard Medical School, Boston, Massachusetts, United States of America.
Matthew W StateYale University Department of Genetics, New Haven, Connecticut, United States of America; Yale University Child Study Center, New Haven, Connecticut, United States of America; University of California, San Francisco, Department of Psychiatry, San Francisco, California, United States of America.
Yale University · USBroad Institute · USMassachusetts General Hospital · USUniversity of California, Los Angeles · USUniversity of California, San Francisco · US

Funding

TISSUE CULTURE MODEL FOR RETINITIS PIGMENTOSA--A MOLECULAR APPROACHR25GM058268 · NIGMS · MOREHOUSE SCHOOL OF MEDICINE · PI HARRIS-HOOKER, SANDRA, STILES, JONATHAN K. · 1998 to 2023
$16.5M
A Comprehensive Approach to Identification of Autism Susceptibility GenesR01MH081754 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GESCHWIND, DANIEL H · 2008 to 2012
$14.6M
Research Training for Medical Students & Physician-Scientists in Child PsychiatryR25MH077823 · NIMH · YALE UNIVERSITY · PI ANDRES S MARTIN · 2006 to 2026
$4.0M
Genomic Profiling and Functional Mutation Analysis in Autism Spectrum DisordersRC2MH089956 · NIMH · YALE UNIVERSITY · PI GIRALDEZ, ANTONIO J, STATE, MATTHEW W. · 2009 to 2010
$2.2M
Genomic Investigations of Tourette's DisorderK08MH099424 · NIMH · YALE UNIVERSITY · PI FERNANDEZ, THOMAS V · 2012 to 2015
$718k
Identification of Candidate Genes at the Synapse in Autism Spectrum DisordersK08MH087639 · NIMH · YALE UNIVERSITY · PI GUPTA, ABHA RANI · 2010 to 2013
$674k
NIGMS NIH HHS R25 GM058268NIMH NIH HHS K08 MH087639NIMH NIH HHS K08MH087639NIMH NIH HHS K08 MH099424NIMH NIH HHS R01 MH081754NIMH NIH HHS R25 MH077823NIMH NIH HHS RC2 MH089956
6 · The paper itself

Abstract

Contactins and Contactin-Associated Proteins, and Contactin-Associated Protein-Like 2 (CNTNAP2) in particular, have been widely cited as autism risk genes based on findings from homozygosity mapping, molecular cytogenetics, copy number variation analyses, and both common and rare single nucleotide association studies. However, data specifically with regard to the contribution of heterozygous single nucleotide variants (SNVs) have been inconsistent. In an effort to clarify the role of rare point mutations in CNTNAP2 and related gene families, we have conducted targeted next-generation sequencing and evaluated existing sequence data in cohorts totaling 2704 cases and 2747 controls. We find no evidence for statistically significant association of rare heterozygous mutations in any of the CNTN or CNTNAP genes, including CNTNAP2, placing marked limits on the scale of their plausible contribution to risk.

Indexed as

Genetic Association StudiesAutistic DisorderCodon, NonsenseContactinsDNA Copy Number VariationsGenetic Predisposition to DiseaseHumansMembrane ProteinsNerve Tissue ProteinsPoint MutationPolymorphism, Single NucleotideSequence Analysis, DNASequence DeletionCNTNAP2 protein, humanCodon, NonsenseContactinsMembrane ProteinsNerve Tissue Proteins

Identifiers

PMID25621974
PMCPMC4306541
OpenAlexW2114086577

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.