Evidence map›Paper›PMID 25621764›Full record

ArticleeLife2015

Translation of 5' leaders is pervasive in genes resistant to eIF2 repression.

Dmitry E Andreev, Patrick B F O'Connor, Ciara Fahey, Elaine M Kenny, Ilya M Terenin, Sergey E Dmitriev, Paul Cormican, Derek W Morris, Ivan N Shatsky, Pavel V Baranov

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 243 papers.

0numbers the graph read from it
0cells of the map it votes in
243citing papers in PubMed
18.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

243 citing papers in PubMed, 378 citations in OpenAlex.

  1. Review
  2. Approaches for Studying Context Specificity of Translation Inhibitor Action.International journal of molecular sciences · 2026
    Review
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183 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Dmitry E AndreevBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Patrick B F O'ConnorSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.
Ciara FaheyDepartment of Psychiatry and Institute of Molecular Medicine, Trinity College Dublin, Dublin, Ireland.
Elaine M KennyDepartment of Psychiatry and Institute of Molecular Medicine, Trinity College Dublin, Dublin, Ireland.
Ilya M TereninBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Sergey E DmitrievBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Paul CormicanDepartment of Psychiatry and Institute of Molecular Medicine, Trinity College Dublin, Dublin, Ireland.
Derek W MorrisDepartment of Psychiatry and Institute of Molecular Medicine, Trinity College Dublin, Dublin, Ireland.
Ivan N ShatskyBelozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russia.
Pavel V BaranovSchool of Biochemistry and Cell Biology, University College Cork, Cork, Ireland.
Lomonosov Moscow State University · RUTrinity College Dublin · IEUniversity College Cork · IE

Funding

Wellcome Trust 094423
6 · The paper itself

Abstract

Eukaryotic cells rapidly reduce protein synthesis in response to various stress conditions. This can be achieved by the phosphorylation-mediated inactivation of a key translation initiation factor, eukaryotic initiation factor 2 (eIF2). However, the persistent translation of certain mRNAs is required for deployment of an adequate stress response. We carried out ribosome profiling of cultured human cells under conditions of severe stress induced with sodium arsenite. Although this led to a 5.4-fold general translational repression, the protein coding open reading frames (ORFs) of certain individual mRNAs exhibited resistance to the inhibition. Nearly all resistant transcripts possess at least one efficiently translated upstream open reading frame (uORF) that represses translation of the main coding ORF under normal conditions. Site-specific mutagenesis of two identified stress resistant mRNAs (PPP1R15B and IFRD1) demonstrated that a single uORF is sufficient for eIF2-mediated translation control in both cases. Phylogenetic analysis suggests that at least two regulatory uORFs (namely, in SLC35A4 and MIEF1) encode functional protein products.

Indexed as

ArsenitesEukaryotic Initiation Factor-2Gene Expression RegulationHEK293 CellsHumansImmediate-Early ProteinsMutagenesis, Site-DirectedOpen Reading FramesOxidative StressProtein BiosynthesisProtein Phosphatase 1Repressor ProteinsRibosomesRNA, MessengerSodium CompoundsArsenitesEukaryotic Initiation Factor-2IFRD1 protein, humanImmediate-Early ProteinsProtein Phosphatase 1Repressor ProteinsRNA, Messengersodium arseniteSodium Compounds5′ leader translationbicistronic mRNAbiochemistryeukaryotic initiation factor 2 (eIF2)evolutionary biologygenomicshumanintegrated stress response (ISR)ribosome profilingupstream open reading frame (uORF)

Identifiers

PMID25621764
PMCPMC4383229
OpenAlexW2102050179

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.