Evidence map›Paper›PMID 25621460›Full record

ArticleNature genetics2015

Convergent evolution of the genomes of marine mammals.

Andrew D Foote, Yue Liu, Gregg W C Thomas, Tomáš Vinař, Jessica Alföldi, Jixin Deng, Shannon Dugan, Cornelis E van Elk, Margaret E Hunter, Vandita Joshi and 16 more

Open access · hybridAbstract read
In one paragraph

Article in Nature genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 241 papers.

0numbers the graph read from it
0cells of the map it votes in
241citing papers in PubMed
23.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

241 citing papers in PubMed, 492 citations in OpenAlex.

  1. Article
  2. Adaptive molecular convergence is pervasive across deep time and largely decoupled from phenotypic convergence.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. The genetic foundations of convergent traits.Nature reviews. Genetics · 2026
    Review
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181 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 12 institutions in 7 countries.

Andrew D Foote1] Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. [2] Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
Yue LiuHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Gregg W C ThomasSchool of Informatics and Computing, Indiana University, Bloomington, Indiana, USA.
Tomáš VinařFaculty of Mathematics, Physics and Informatics, Comenius University, Bratislava, Slovakia.
Jessica AlföldiBroad Institute of Harvard and MIT, Cambridge, Massachusetts, USA.ORCID 0000000197136200
Jixin DengHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Shannon DuganHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Cornelis E van ElkDolfinarium Harderwijk, Harderwijk, the Netherlands.
Margaret E HunterSirenia Project, Southeast Ecological Science Center, US Geological Survey, Gainesville, Florida, USA.
Vandita JoshiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Ziad KhanHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Christie KovarHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Sandra L LeeHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Kerstin Lindblad-Toh1] Broad Institute of Harvard and MIT, Cambridge, Massachusetts, USA. [2] Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Annalaura Mancia1] Marine Biomedicine and Environmental Science Center, Medical University of South Carolina, Charleston, South Carolina, USA. [2] Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy.
Rasmus NielsenCenter for Theoretical Evolutionary Genomics, University of California, Berkeley, Berkeley, California, USA.
Xiang QinHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Jiaxin QuHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Brian J RaneyCenter for Biomolecular Science and Engineering, University of California, Santa Cruz, Santa Cruz, California, USA.
Nagarjun VijayDepartment of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden.
Jochen B W Wolf1] Department of Evolutionary Biology, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden. [2] Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Matthew W Hahn1] School of Informatics and Computing, Indiana University, Bloomington, Indiana, USA. [2] Department of Biology, Indiana University, Bloomington, Indiana, USA.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Kim C WorleyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
M Thomas P Gilbert1] Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark. [2] Trace and Environmental DNA Laboratory, Department of Environment and Agriculture, Curtin University, Perth, Western Australia, Australia.ORCID 0000000258057195
Richard A GibbsHuman Genome Sequencing Center, Baylor College of Medicine, Houston, Texas, USA.
Baylor College of Medicine · USBroad Institute · USIndiana University Bloomington · USUppsala University · SEComenius University Bratislava · SKCurtin University · AUEvolutionary Genomics (United States) · USMedical University of South Carolina · USUnited States Geological Survey · USUniversity of California, Santa Cruz · USUniversity of Copenhagen · DKVolandis · NL

Funding

Large Scale Sequencing and Analysis of GenomesU54HG003067 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GABRIEL, STACEY, LANDER, ERIC S · 2004 to 2015
$568.6M
The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
The UCSC Genome BrowserU41HG002371 · NHGRI · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI KENT, WILLIAM JAMES · 2012 to 2021
$36.6M
NHGRI NIH HHS U41 HG002371NHGRI NIH HHS U54 HG003067NHGRI NIH HHS U54 HG003067-08NHGRI NIH HHS U54 HG003273
6 · The paper itself

Abstract

Marine mammals from different mammalian orders share several phenotypic traits adapted to the aquatic environment and therefore represent a classic example of convergent evolution. To investigate convergent evolution at the genomic level, we sequenced and performed de novo assembly of the genomes of three species of marine mammals (the killer whale, walrus and manatee) from three mammalian orders that share independently evolved phenotypic adaptations to a marine existence. Our comparative genomic analyses found that convergent amino acid substitutions were widespread throughout the genome and that a subset of these substitutions were in genes evolving under positive selection and putatively associated with a marine phenotype. However, we found higher levels of convergent amino acid substitutions in a control set of terrestrial sister taxa to the marine mammals. Our results suggest that, whereas convergent molecular evolution is relatively common, adaptive molecular convergence linked to phenotypic convergence is comparatively rare.

Indexed as

Evolution, MolecularGenomeAdaptation, PhysiologicalAmino Acid SubstitutionAnimalsHumansMammalsPhenotypePhylogenySelection, Genetic

Identifiers

PMID25621460
PMCPMC4644735
OpenAlexW2169133561

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.