Evidence map›Paper›PMID 25620525›Full record

ArticleMolecular microbiology2015

A unique open reading frame within the comX gene of Streptococcus mutans regulates genetic competence and oxidative stress tolerance.

Justin Kaspar, Sang-Joon Ahn, Sara R Palmer, Sang Chul Choi, Michael J Stanhope, Robert A Burne

Abstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Review
  2. Article
  3. Streptococcal peptides and their roles in host-microbe interactions.Frontiers in cellular and infection microbiology · 2023
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Peptides encoded in theMicrobiology (Reading, England) · 2020
    Article
  10. Article
  11. Expanding the Vocabulary of Peptide Signals inFrontiers in cellular and infection microbiology · 2019
    Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Intercellular Communication via theJournal of bacteriology · 2017
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Justin KasparDepartment of Oral Biology, College of Dentistry, University of Florida, Gainesville, FL, 32610, USA.
Sang-Joon Ahn
Sara R Palmer
Sang Chul Choi
Michael J Stanhope
Robert A Burne

Funding

Comprehensive Training Program in Oral BiologyT90DE021990 · NIDCR · UNIVERSITY OF FLORIDA · PI Jose A Lemos · 2011 to 2026
$8.2M
GENETICS AND PHYSIOLOGY OF ORAL BIOFILMSR01DE013239 · NIDCR · UNIVERSITY OF ROCHESTER · PI BURNE, ROBERT A · 1999 to 2019
$6.6M
Role of the Spx Regulator in Streptococcus mutansR01DE019783 · NIDCR · UNIVERSITY OF ROCHESTER · PI LEMOS, JOSE A · 2010 to 2020
$3.7M
Integration of Stress Tolerance in Competence DevelopmentF31DE024416 · NIDCR · UNIVERSITY OF FLORIDA · PI KASPAR, JUSTIN RAY · 2014 to 2015
$74k
NIDCR NIH HHS F31 DE024416NIDCR NIH HHS R01 DE013239NIDCR NIH HHS R01 DE019783NIDCR NIH HHS R01 DE13239NIDCR NIH HHS T90 DE021990NIDCR NIH HHS T90 DE21990
6 · The paper itself

Abstract

Streptococcus mutans displays complex regulation of genetic competence, with ComX controlling late competence gene transcription. The rcrRPQ operon has been shown to link oxidative stress tolerance, (p)ppGpp metabolism and competence in S. mutans. Importantly, an rcrR polar (ΔrcrR-P) mutant is hyper-transformable, but an rcrR non-polar (ΔrcrR-NP) mutant cannot be transformed. Transcriptome comparisons of the rcrR mutants using RNA-Seq and quantitative real-time polymerase chain reaction revealed little expression in the 5' region of comX in ΔrcrR-NP, but high level expression in the 3' region. Northern blotting with comX probes revealed two distinct transcripts in the ΔrcrR-P and ΔrcrR-NP strains, and 5' Rapid Amplification of cDNA Ends mapped the 5' terminus of the shorter transcript to nt +140 of the comX structural gene, where a unique 69-aa open reading frame, termed XrpA, was encoded in a different reading frame than ComX. Two single-nucleotide substitution mutants (comX::T162C; comX::T210A) were introduced to disrupt XrpA without affecting the sequence of ComX. When the mutations were in the ΔrcrR-NP genetic background, ComX production and transformation were restored. Overexpression of xrpA led to impaired growth in aerobic conditions and decreased transformability. These results reveal an unprecedented mechanism for competence regulation and stress tolerance by a gene product encoded within the comX gene that appears unique to S. mutans.

Indexed as

DNA Transformation CompetenceGene Expression Regulation, BacterialOpen Reading FramesOxidative StressGene Expression ProfilingReal-Time Polymerase Chain ReactionSequence Analysis, RNAStreptococcus mutansTranscription, Genetic

Identifiers

PMID25620525
PMCPMC4414889

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.