Evidence map›Paper›PMID 25620203›Full record

ArticleAmerican journal of human genetics2015

Mutations in DDX58, which encodes RIG-I, cause atypical Singleton-Merten syndrome.

Mi-Ae Jang, Eun Kyoung Kim, Hesung Now, Nhung T H Nguyen, Woo-Jong Kim, Joo-Yeon Yoo, Jinhyuk Lee, Yun-Mi Jeong, Cheol-Hee Kim, Ok-Hwa Kim and 16 more

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in American journal of human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 133 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
133citing papers in PubMed, 2 pooled it
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

133 citing papers in PubMed, 2 syntheses or guidelines pooled it, 210 citations in OpenAlex.

  1. Pooled it
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  9. Mouse models of type I interferonopathies.Human molecular genetics · 2025
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  18. Sterile activation of RNA-sensing pathways in autoimmunity.Journal of molecular cell biology · 2024
    Review
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  20. Review

73 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 5 institutions in 1 country.

Mi-Ae JangDepartments of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Eun Kyoung KimDivision of Cardiology, Department of Medicine, Heart Vascular Stroke Institute, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Hesung NowDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea.
Nhung T H NguyenDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea.
Woo-Jong KimDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea.
Joo-Yeon YooDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 790-784, Korea.
Jinhyuk LeeKorean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 305-806, Korea; Department of Bioinformatics, University of Sciences and Technology, Daejeon 305-350, Korea.
Yun-Mi JeongDepartment of Biology, Chungnam National University, Daejeon 305-764, Korea.
Cheol-Hee KimDepartment of Biology, Chungnam National University, Daejeon 305-764, Korea.
Ok-Hwa KimDepartment of Radiology, Woorisoa Children's Hospital, Seoul 152-862, Korea.
Seongsoo SohnDepartment of Ophthalmology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Seong-Hyeuk NamSamsung SDS, Seoul 138-240, Korea.
Yoojin HongSamsung SDS, Seoul 138-240, Korea.
Yong Seok LeeSamsung SDS, Seoul 138-240, Korea.
Sung-A ChangDivision of Cardiology, Department of Medicine, Heart Vascular Stroke Institute, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Shin Yi JangDivision of Cardiology, Department of Medicine, Heart Vascular Stroke Institute, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Jong-Won KimDepartments of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Myung-Shik LeeDivision of Endocrinology and Metabolism, Department of Medicine, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
So Young LimDepartment of Plastic Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Ki-Sun SungDepartment of Orthopedic Surgery, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Ki-Tae ParkDepartment of Pediatric Dentistry, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Byoung Joon KimDepartment of Neurology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Joo-Heung LeeDepartment of Dermatology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Duk-Kyung KimDivision of Cardiology, Department of Medicine, Heart Vascular Stroke Institute, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea.
Changwon KeeDepartment of Ophthalmology, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea. Electronic address: ckee@skku.edu.
Chang-Seok KiDepartments of Laboratory Medicine and Genetics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul 135-710, Korea. Electronic address: changski@skku.edu.
Samsung Medical Center · KRPohang University of Science and Technology · KRSamsung (South Korea) · KRChungnam National University · KRThe Catholic University of Korea Yeouido St. Mary's Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Singleton-Merten syndrome (SMS) is an autosomal-dominant multi-system disorder characterized by dental dysplasia, aortic calcification, skeletal abnormalities, glaucoma, psoriasis, and other conditions. Despite an apparent autosomal-dominant pattern of inheritance, the genetic background of SMS and information about its phenotypic heterogeneity remain unknown. Recently, we found a family affected by glaucoma, aortic calcification, and skeletal abnormalities. Unlike subjects with classic SMS, affected individuals showed normal dentition, suggesting atypical SMS. To identify genetic causes of the disease, we performed exome sequencing in this family and identified a variant (c.1118A>C [p.Glu373Ala]) of DDX58, whose protein product is also known as RIG-I. Further analysis of DDX58 in 100 individuals with congenital glaucoma identified another variant (c.803G>T [p.Cys268Phe]) in a family who harbored neither dental anomalies nor aortic calcification but who suffered from glaucoma and skeletal abnormalities. Cys268 and Glu373 residues of DDX58 belong to ATP-binding motifs I and II, respectively, and these residues are predicted to be located closer to the ADP and RNA molecules than other nonpathogenic missense variants by protein structure analysis. Functional assays revealed that DDX58 alterations confer constitutive activation and thus lead to increased interferon (IFN) activity and IFN-stimulated gene expression. In addition, when we transduced primary human trabecular meshwork cells with c.803G>T (p.Cys268Phe) and c.1118A>C (p.Glu373Ala) mutants, cytopathic effects and a significant decrease in cell number were observed. Taken together, our results demonstrate that DDX58 mutations cause atypical SMS manifesting with variable expression of glaucoma, aortic calcification, and skeletal abnormalities without dental anomalies.

Indexed as

Models, MolecularAdultAortic DiseasesBase SequenceCells, CulturedChild, PreschoolDEAD Box Protein 58DEAD-box RNA HelicasesDental Enamel HypoplasiaExomeFemaleGenes, DominantGlaucomaHumansMaleMetacarpusDEAD Box Protein 58DEAD-box RNA HelicasesReceptors, ImmunologicRIGI protein, human

Identifiers

PMID25620203
PMCPMC4320253
OpenAlexW2061173833

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.