ArticleScientific reports2015
Developing genome-wide microsatellite markers of bamboo and their applications on molecular marker assisted taxonomy for accessions in the genus Phyllostachys.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 1 of them a synthesis that pooled it.
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Who cites it
37 citing papers in PubMed, 1 synthesis or guideline pooled it, 65 citations in OpenAlex.
- Traditional System Versus DNA Barcoding in Identification of Bamboo Species: A Systematic Review.Molecular biotechnology · 2021Pooled it
- Exploring Genetic Diversity in a Temperate Bamboo: A Study Using SSR Markers.Plants (Basel, Switzerland) · 2026Article
- SSR marker development for analysis of the genetic diversity and identification of species and infraspecific ranks in the genus Phyllostachys.BMC plant biology · 2026Article
- Genome-wide development of genomic SSR markers, polymorphism analysis, and dosage-aware SSR fingerprinting in hexaploid Camellia Oleifera.BMC plant biology · 2025Article
- Development and Future Prospects of Bamboo Gene Science.International journal of molecular sciences · 2025Review
- Identification of New Cultivar and Different Provenances ofPlants (Basel, Switzerland) · 2024Article
- Multi-omics signatures of diverse plant callus cultures.Plant biotechnology (Tokyo, Japan) · 2024Article
- Evolutionary relationship of moso bamboo forms and a multihormone regulatory cascade involving culm shape variation.Plant biotechnology journal · 2024Article
- Complete Chloroplast Genome Determination ofGenes · 2023Article
- Pattern and variation in simple sequence repeat (SSR) at different genomic regions and its implications to maize evolution and breeding.BMC genomics · 2023Article
- Microsatellite Variation in the Most Devastating Beetle Pests (Coleoptera: Curculionidae) of Agricultural and Forest Crops.International journal of molecular sciences · 2022Article
- Article
- A Concise Review ofPlants (Basel, Switzerland) · 2021Review
- Draft genome of the herbaceous bamboo Raddia distichophylla.G3 (Bethesda, Md.) · 2021Article
- Targeted enrichment of novel chloroplast-based probes reveals a large-scale phylogeny of 412 bamboos.BMC plant biology · 2021Article
- Bamboo Transposon Research: Current Status and Perspectives.Methods in molecular biology (Clifton, N.J.) · 2021Review
- Transcriptome wide SSR discovery cross-taxa transferability and development of marker database for studying genetic diversity population structure of Lilium species.Scientific reports · 2020Article
- Genome-Wide Characterization and Comparative Analyses of Simple Sequence Repeats among Four Miniature Pig Breeds.Animals : an open access journal from MDPI · 2020Article
- Genetic diversity, population structure, and gene flow analysis of lowland bamboo [Ecology and evolution · 2020Article
- The landscape of microsatellites in the enset (Ensete ventricosum) genome and web-based marker resource development.Scientific reports · 2020Article
Corrections and comments
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Authors and funding
9 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Morphology-based taxonomy via exiguously reproductive organ has severely limitation on bamboo taxonomy, mainly owing to infrequent and unpredictable flowering events of bamboo. Here, we present the first genome-wide analysis and application of microsatellites based on the genome of moso bamboo (Phyllostachys edulis) to assist bamboo taxonomy. Of identified 127,593 microsatellite repeat-motifs, the primers of 1,451 microsatellites were designed and 1,098 markers were physically mapped on the genome of moso bamboo. A total of 917 markers were successfully validated in 9 accessions with ~39.8% polymorphic potential. Retrieved from validated microsatellite markers, 23 markers were selected for polymorphic analysis among 78 accessions and 64 alleles were detected with an average of 2.78 alleles per primers. The cluster result indicated the majority of the accessions were consistent with their current taxonomic classification, confirming the suitability and effectiveness of the developed microsatellite markers. The variations of microsatellite marker in different species were confirmed by sequencing and in silico comparative genome mapping were investigated. Lastly, a bamboo microsatellites database (http://www.bamboogdb.org/ssr) was implemented to browse and search large information of bamboo microsatellites. Consequently, our results of microsatellite marker development are valuable for assisting bamboo taxonomy and investigating genomic studies in bamboo and related grass species.
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