Evidence map›Paper›PMID 25618143›Full record

ArticleJournal of experimental botany2015

Genetic structure of Miscanthus sinensis and Miscanthus sacchariflorus in Japan indicates a gradient of bidirectional but asymmetric introgression.

Lindsay V Clark, J Ryan Stewart, Aya Nishiwaki, Yo Toma, Jens Bonderup Kjeldsen, Uffe Jørgensen, Hua Zhao, Junhua Peng, Ji Hye Yoo, Kweon Heo and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
17.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 88 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 5 countries.

Lindsay V ClarkDepartment of Crop Sciences, University of Illinois, Urbana-Champaign, Urbana, IL 61801, USA.
J Ryan StewartDepartment of Plant and Wildlife Sciences, Brigham Young University, Provo, UT 84602, USA.
Aya NishiwakiField Science Center, Faculty of Agriculture, University of Miyazaki, Miyazaki, Miyazaki 889-2192, Japan.
Yo TomaFaculty of Agriculture, Ehime University, Matsuyama, Ehime 790-8566, Japan.
Jens Bonderup KjeldsenDepartment of Agroecology, Aarhus University, Tjele DK-8830, Denmark.
Uffe JørgensenDepartment of Agroecology, Aarhus University, Tjele DK-8830, Denmark.
Hua ZhaoCollege of Horticulture and Forestry Science, Huazhong Agricultural University, Wuhan, Hubei 430070, China.
Junhua PengScience and Technology Center, China Seed Group Co. Ltd, Wuhan, Hubei 430040, China.
Ji Hye YooKangwon National University, Chuncheon, Gangwon 200-701, South Korea.
Kweon HeoKangwon National University, Chuncheon, Gangwon 200-701, South Korea.
Chang Yeon YuKangwon National University, Chuncheon, Gangwon 200-701, South Korea.
Toshihiko YamadaField Science Center for Northern Biosphere, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.
Erik J SacksDepartment of Crop Sciences, University of Illinois, Urbana-Champaign, Urbana, IL 61801, USA esacks@illinois.edu.
Kangwon National University · KRAarhus University · DKUniversity of Illinois Urbana-Champaign · USBrigham Young University · USEhime University · JPHokkaido University · JPHuazhong Agricultural University · CNUniversity of Miyazaki · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Unilateral introgression from diploids to tetraploids has been hypothesized to be an important evolutionary mechanism in plants. However, few examples have been definitively identified, perhaps because data of sufficient depth and breadth were difficult to obtain before the advent of affordable high-density genotyping. Throughout Japan, tetraploid Miscanthus sacchariflorus and diploid Miscanthus sinensis are common, and occasionally hybridize. In this study, 667 M. sinensis and 78 M. sacchariflorus genotypes from Japan were characterized using 20 704 SNPs and ten plastid microsatellites. Similarity of SNP genotypes between diploid and tetraploid M. sacchariflorus indicated that the tetraploids originated through autopolyploidy. Structure analysis indicated a gradient of introgression from diploid M. sinensis into tetraploid M. sacchariflorus throughout Japan; most tetraploids had some M. sinensis DNA. Among phenotypically M. sacchariflorus tetraploids, M. sinensis ancestry averaged 7% and ranged from 1-39%, with introgression greatest in southern Japan. Unexpectedly, rare (~1%) diploid M. sinensis individuals from northern Japan were found with 6-27% M. sacchariflorus ancestry. Population structure of M. sinensis in Japan included three groups, and was driven primarily by distance, and secondarily by geographic barriers such as mountains and straits. Miscanthus speciation is a complex and dynamic process. In contrast to limited introgression between diploid M. sacchariflorus and M. sinensis in northern China, selection for adaptation to a moderate maritime climate probably favoured cross-ploidy introgressants in southern Japan. These results will help guide the selection of Miscanthus accessions for the breeding of biomass cultivars.

Indexed as

Hybridization, GeneticJapanMicrosatellite RepeatsPlastidsPoaceaePolymorphism, Single NucleotideBiomass cropcross-ploidy introgressionhybridizationPoaceaepolyploidypopulation geneticsRAD-seq.

Identifiers

PMID25618143
PMCPMC4493777
OpenAlexW2100095869

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.