Evidence map›Paper›PMID 25617411›Full record

ArticleAnnals of botany2015

Arabidopsis SHR and SCR transcription factors and AUX1 auxin influx carrier control the switch between adventitious rooting and xylogenesis in planta and in in vitro cultured thin cell layers.

F Della Rovere, L Fattorini, S D'Angeli, A Veloccia, S Del Duca, G Cai, G Falasca, M M Altamura

Open access · hybridAbstract read
In one paragraph

Article in Annals of botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
13.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 81 citations in OpenAlex.

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  13. Use of Thin Cell Layer (TCL) to Obtain Somatic Embryogenesis.Methods in molecular biology (Clifton, N.J.) · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

F Della RovereDepartment of Environmental Biology, Sapienza University of Rome, Italy, Department of Biological, Geological and Environmental Sciences, University of Bologna, Italy and Department of Life Sciences, University of Siena, Italy.
L FattoriniDepartment of Environmental Biology, Sapienza University of Rome, Italy, Department of Biological, Geological and Environmental Sciences, University of Bologna, Italy and Department of Life Sciences, University of Siena, Italy.
S D'AngeliDepartment of Environmental Biology, Sapienza University of Rome, Italy, Department of Biological, Geological and Environmental Sciences, University of Bologna, Italy and Department of Life Sciences, University of Siena, Italy.
A VelocciaDepartment of Environmental Biology, Sapienza University of Rome, Italy, Department of Biological, Geological and Environmental Sciences, University of Bologna, Italy and Department of Life Sciences, University of Siena, Italy.
S Del DucaDepartment of Environmental Biology, Sapienza University of Rome, Italy, Department of Biological, Geological and Environmental Sciences, University of Bologna, Italy and Department of Life Sciences, University of Siena, Italy.
G CaiDepartment of Environmental Biology, Sapienza University of Rome, Italy, Department of Biological, Geological and Environmental Sciences, University of Bologna, Italy and Department of Life Sciences, University of Siena, Italy.
G FalascaDepartment of Environmental Biology, Sapienza University of Rome, Italy, Department of Biological, Geological and Environmental Sciences, University of Bologna, Italy and Department of Life Sciences, University of Siena, Italy.
M M AltamuraDepartment of Environmental Biology, Sapienza University of Rome, Italy, Department of Biological, Geological and Environmental Sciences, University of Bologna, Italy and Department of Life Sciences, University of Siena, Italy mariamaddalena.altamura@uniroma1.it.
Sapienza University of Rome · ITUniversity of Bologna · ITUniversity of Siena · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimsAdventitious roots (ARs) are essential for vegetative propagation. The Arabidopsis thaliana transcription factors SHORT ROOT (SHR) and SCARECROW (SCR) affect primary/lateral root development, but their involvement in AR formation is uncertain. LAX3 and AUX1 auxin influx carriers contribute to primary/lateral root development. LAX3 expression is regulated by SHR, and LAX3 contributes to AR tip auxin maximum. In contrast, AUX1 involvement in AR development is unknown. Xylogenesis is induced by auxin plus cytokinin as is AR formation, but the genes involved are largely unknown. Stem thin cell layers (TCLs) form ARs and undergo xylogenesis under the same auxin plus cytokinin input. The aim of this research was to investigate SHR, SCR, AUX1 and LAX3 involvement in AR formation and xylogenesis in intact hypocotyls and stem TCLs in arabidopsis.

methodsHypocotyls of scr-1, shr-1, lax3, aux1-21 and lax3/aux1-21 Arabidopsis thaliana null mutant seedlings grown with or without auxin plus cytokinin were examined histologically, as were stem TCLs cultured with auxin plus cytokinin. SCR and AUX1 expression was monitored using pSCR::GFP and AUX1::GUS lines, and LAX3 expression and auxin localization during xylogenesis were monitored by using LAX3::GUS and DR5::GUS lines. KEY

resultsAR formation was inhibited in all mutants, except lax3. SCR was expressed in pericycle anticlinally derived AR-forming cells of intact hypocotyls, and in cell clumps forming AR meristemoids of TCLs. The apex was anomalous in shr and scr ARs. In all mutant hypocotyls, the pericycle divided periclinally to produce xylogenesis. Xylary element maturation was favoured by auxin plus cytokinin in shr and aux1-21. Xylogenesis was enhanced in TCLs, and in aux1-21 and shr in particular. AUX1 was expressed before LAX3, i.e. in the early derivatives leading to either ARs or xylogenesis.

conclusionsAR formation and xylogenesis are developmental programmes that are inversely related, but they involve fine-tuning by the same proteins, namely SHR, SCR and AUX1. Pericycle activity is central for the equilibrium between xylary development and AR formation in the hypocotyl, with a role for AUX1 in switching between, and balancing of, the two developmental programmes.

Indexed as

ArabidopsisArabidopsis ProteinsCells, CulturedGene Expression Regulation, DevelopmentalGene Expression Regulation, PlantHypocotylIndolesKinetinMembrane Transport ProteinsMutationPlant RootsPlant StemsTranscription FactorsXylemArabidopsis ProteinsAUX1 protein, Arabidopsisindolebutyric acidIndolesKinetinLAX3 protein, ArabidopsisMembrane Transport ProteinsSCR protein, ArabidopsisSHORT ROOT protein, ArabidopsisTranscription FactorsAdventitious rootingArabidopsis thalianaAUX1auxin influx carriersLAX3SCRSHRthin cell layersxylogenesis

Identifiers

PMID25617411
PMCPMC4343292
OpenAlexW2153647456

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.