Evidence map›Paper›PMID 25616954›Full record

ArticleTuberculosis (Edinburgh, Scotland)2015

TLR9 gene region polymorphisms and susceptibility to tuberculosis in Vietnam.

A D Graustein, D J Horne, M Arentz, N D Bang, T T H Chau, G E Thwaites, M Caws, N T T Thuong, S J Dunstan, T R Hawn

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in Tuberculosis (Edinburgh, Scotland), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Research progress on genetic control of host susceptibility to tuberculosis.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2022
    Review
  5. Review
  6. The pathogenesis of tuberculous meningitis.Journal of leukocyte biology · 2019
    Review
  7. The Interplay of Human andFrontiers in genetics · 2019
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 4 countries.

A D GrausteinUniv. of Washington, Seattle, WA, USA. Electronic address: adg2001@u.washington.edu.
D J HorneUniv. of Washington, Seattle, WA, USA.
M ArentzUniv. of Washington, Seattle, WA, USA.
N D BangPham Ngoc Thach Hospital for Tuberculosis & Lung Disease, HCMC, Viet Nam.
T T H ChauHospital for Tropical Diseases, HCMC, Viet Nam.
G E ThwaitesOxford Univ. Clinical Research Unit, Hospital for Tropical Diseases, HCMC, Viet Nam; Nuffield Dept. of Clinical Medicine, Centre for Tropical Medicine, Oxford Univ., UK.
M CawsOxford Univ. Clinical Research Unit, Hospital for Tropical Diseases, HCMC, Viet Nam; Liverpool School of Tropical Medicine, Pembroke Place, UK.
N T T ThuongOxford Univ. Clinical Research Unit, Hospital for Tropical Diseases, HCMC, Viet Nam; Nuffield Dept. of Clinical Medicine, Centre for Tropical Medicine, Oxford Univ., UK.
S J DunstanOxford Univ. Clinical Research Unit, Hospital for Tropical Diseases, HCMC, Viet Nam; Nuffield Dept. of Clinical Medicine, Centre for Tropical Medicine, Oxford Univ., UK; The Nossal Institute for Global Health, The University of Melbourne, Australia.
T R HawnUniv. of Washington, Seattle, WA, USA.
University of Washington · USHospital for Tropical Diseases · VNUniversity of Oxford · GBLiverpool School of Tropical Medicine · GBPham Ngoc Thach Hospital · VN

Funding

Innate Immunogenetics & Human InfectionsK24AI089794 · NIAID · UNIVERSITY OF WASHINGTON · PI HAWN, THOMAS R · 2010 to 2014
$746k
NIAID NIH HHS K24 AI089794NIAID NIH HHS K24AI089794Wellcome Trust 089276Wellcome Trust 089276/Z/09/Z
6 · The paper itself

Abstract

Humans exposed to Mycobacterium tuberculosis (Mtb) show variation in susceptibility to infection and differences in tuberculosis (TB) disease outcome. Toll-like receptor 9 (TLR9) is a pattern recognition receptor that mediates recognition of Mtb and modulates Mtb-specific T-cell responses. Using a case-population design, we evaluated whether single nucleotide polymorphisms (SNPs) in the TLR9 gene region are associated with susceptibility to pulmonary or meningeal TB as well as neurologic presentation and mortality in the meningeal TB group. In a discovery cohort (n = 352 cases, 382 controls), three SNPs were associated with TB (all forms, p < 0.05) while three additional SNPs neared significance (0.05 < p < 0.1). When these six SNPs were evaluated in a validation cohort (n = 339 cases, 367 controls), one was significant (rs352142) while another neared significance (rs352143). When the cohorts were combined, rs352142 was most strongly associated with meningeal tuberculosis (dominant model; p = 0.0002, OR 2.36, CI 1.43-3.87) while rs352143 was associated with pulmonary tuberculosis (recessive model; p = 0.006, OR 5.3, CI 1.26-31.13). None of the SNPs were associated with mortality. This is the first demonstration of an association between a TLR9 gene region SNP and tuberculous meningitis. In addition, this extends previous findings that support associations of TLR9 SNPs with pulmonary tuberculosis.

Indexed as

Polymorphism, Single NucleotideAdolescentAdultAgedCase-Control StudiesGenetic Predisposition to DiseaseGenotypeHaplotypesHumansMiddle AgedPhenotypeToll-Like Receptor 9TuberculosisTuberculosis, MeningealTuberculosis, PulmonaryVietnamTLR9 protein, humanToll-Like Receptor 9MeningitisMycobacterium tuberculosisTLR9Tuberculosis

Identifiers

PMID25616954
PMCPMC4573533
OpenAlexW2089259998

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.