Evidence map›Paper›PMID 25616804›Full record

ArticleApplied and environmental microbiology2015

Elucidation of echovirus 30's origin and transmission during the 2012 aseptic meningitis outbreak in Guangdong, China, through continuing environmental surveillance.

Jing Lu, Huanying Zheng, Xue Guo, Yong Zhang, Hui Li, Leng Liu, Hanri Zeng, Ling Fang, Yanling Mo, Hiromu Yoshida and 5 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Antiviral Activity of Itraconazole against Echovirus 30 InfectionOsong public health and research perspectives · 2017
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jing LuGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China Guangdong Provincial Institution of Public Health, Guangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Huanying ZhengGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China zhenghy.gdcdc@gmail.com.
Xue GuoGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Yong ZhangWHO WPRO Regional Polio Reference Laboratory and Ministry of Health Key Laboratory for Medical Virology, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.
Hui LiGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Leng LiuGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Hanri ZengGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Ling FangGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Yanling MoGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Hiromu YoshidaDepartment of Virology II, National Institute of Infectious Diseases, Tokyo, Japan.
Lina YiGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China Guangdong Provincial Institution of Public Health, Guangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Tao LiuGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China Guangdong Provincial Institution of Public Health, Guangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.
Shannon RutherfordCentre for Environment and Population Health, Griffith University, Nathan, Queensland, Australia.
Wenbo XuWHO WPRO Regional Polio Reference Laboratory and Ministry of Health Key Laboratory for Medical Virology, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, People's Republic of China.
Changwen KeGuangdong Center for Disease Control and Prevention, Guangzhou, People's Republic of China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An aseptic meningitis outbreak occurred in Luoding City of Guangdong, China, in 2012, and echovirus type 30 (ECHO30) was identified as the major causative pathogen. Environmental surveillance indicated that ECHO30 was detected in the sewage of a neighboring city, Guangzhou, from 2010 to 2012 and also in Luoding City sewage samples (6/43, 14%) collected after the outbreak. In order to track the potential origin of the outbreak viral strains, we sequenced the VP1 genes of 29 viral strains from clinical patients and environmental samples. Sequence alignments and phylogenetic analyses based on VP1 gene sequences revealed that virus strains isolated from the sewage of Guangzhou and Luoding cities matched well the clinical strains from the outbreak, with high nucleotide sequence similarity (98.5% to 100%) and similar cluster distribution. Five ECHO30 clinical strains were clustered with the Guangdong environmental strains but diverged from strains from other regions, suggesting that this subcluster of viruses most likely originated from the circulating virus in Guangdong rather than having been more recently imported from other regions. These findings underscore the importance of long-term, continuous environmental surveillance and genetic analysis to monitor circulating enteroviruses.

Indexed as

Disease OutbreaksEnvironmental MonitoringChinaCitiesCluster AnalysisEchovirus InfectionsEnterovirus B, HumanHumansMeningitis, AsepticMolecular EpidemiologyMolecular Sequence DataPhylogenyRNA, ViralSequence AlignmentSequence Analysis, DNASewageRNA, ViralSewageViral Structural Proteins

Identifiers

PMID25616804
PMCPMC4357961

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.