Evidence map›Paper›PMID 25616788›Full record

ArticleApplied and environmental microbiology2015

Extrahuman epidemiology of Acinetobacter baumannii in Lebanon.

Rayane Rafei, Monzer Hamze, Hélène Pailhoriès, Matthieu Eveillard, Laurent Marsollier, Marie-Laure Joly-Guillou, Fouad Dabboussi, Marie Kempf

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 136 citations in OpenAlex.

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7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Rayane RafeiL'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, UPRES EA3142, Institut de Biologie en Santé-IRIS, CHU, Angers, France Laboratoire Microbiologie Santé et Environnement (LMSE), Centre AZM pour la Recherche en Biotechnologie et Ses Applications, Université Libanaise, Tripoli, Lebanon.
Monzer HamzeLaboratoire Microbiologie Santé et Environnement (LMSE), Centre AZM pour la Recherche en Biotechnologie et Ses Applications, Université Libanaise, Tripoli, Lebanon.
Hélène PailhorièsL'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, UPRES EA3142, Institut de Biologie en Santé-IRIS, CHU, Angers, France Laboratoire de Bactériologie, Institut de Biologie en Santé-PBH, CHU, Angers, France.
Matthieu EveillardL'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, UPRES EA3142, Institut de Biologie en Santé-IRIS, CHU, Angers, France Laboratoire de Bactériologie, Institut de Biologie en Santé-PBH, CHU, Angers, France.
Laurent MarsollierATOMycA, INSERM Avenir Team, CRCNA, INSERM U892, 6299 CNRS and l'UNAM, CHU and Université d'Angers, Angers, France.
Marie-Laure Joly-GuillouL'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, UPRES EA3142, Institut de Biologie en Santé-IRIS, CHU, Angers, France Laboratoire de Bactériologie, Institut de Biologie en Santé-PBH, CHU, Angers, France.
Fouad DabboussiLaboratoire Microbiologie Santé et Environnement (LMSE), Centre AZM pour la Recherche en Biotechnologie et Ses Applications, Université Libanaise, Tripoli, Lebanon.
Marie KempfL'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, UPRES EA3142, Institut de Biologie en Santé-IRIS, CHU, Angers, France Laboratoire de Bactériologie, Institut de Biologie en Santé-PBH, CHU, Angers, France makempf@chu-angers.fr.
Université d'Angers · FRCentre Hospitalier Universitaire d'Angers · FRLebanese University · LBUniversité Nantes Angers Le Mans · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The presence of Acinetobacter baumannii outside hospitals is still a controversial issue. The objective of our study was to explore the extrahospital epidemiology of A. baumannii in Lebanon. From February 2012 to October 2013, a total of 73 water samples, 51 soil samples, 37 raw cow milk samples, 50 cow meat samples, 7 raw cheese samples, and 379 animal samples were analyzed by cultural methods for the presence of A. baumannii. Species identification was performed by rpoB gene sequencing. Antibiotic susceptibility was investigated, and the A. baumannii population was studied by two genotyping approaches: multilocus sequence typing (MLST) and blaOXA-51 sequence-based typing (SBT). A. baumannii was detected in 6.9% of water samples, 2.7% of milk samples, 8.0% of meat samples, 14.3% of cheese samples, and 7.7% of animal samples. All isolates showed a susceptible phenotype against most of the antibiotics tested and lacked carbapenemase-encoding genes, except one that harbored a blaOXA-143 gene. MLST analysis revealed the presence of 36 sequence types (STs), among which 24 were novel STs reported for the first time in this study. blaOXA-51 SBT showed the presence of 34 variants, among which 21 were novel and all were isolated from animal origins. Finally, 30 isolates had new partial rpoB sequences and were considered putative new Acinetobacter species. In conclusion, animals can be a potential reservoir for A. baumannii and the dissemination of new emerging carbapenemases. The roles of the novel animal clones identified in community-acquired infections should be investigated.

Indexed as

Food MicrobiologySoil MicrobiologyWater MicrobiologyAcinetobacter baumanniiAcinetobacter InfectionsAnimalsAnti-Bacterial AgentsCattleDNA, BacterialDNA-Directed RNA PolymerasesGenotypeLebanonMicrobial Sensitivity TestsMolecular Sequence DataMolecular TypingSequence Analysis, DNAAnti-Bacterial AgentsDNA, BacterialDNA-Directed RNA PolymerasesRNA polymerase beta subunit

Identifiers

PMID25616788
PMCPMC4357923
OpenAlexW2100075157

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.