Evidence map›Paper›PMID 25615886›Full record

ArticleNature communications2015

Systems genetics identifies Sestrin 3 as a regulator of a proconvulsant gene network in human epileptic hippocampus.

Michael R Johnson, Jacques Behmoaras, Leonardo Bottolo, Michelle L Krishnan, Katharina Pernhorst, Paola L Meza Santoscoy, Tiziana Rossetti, Doug Speed, Prashant K Srivastava, Marc Chadeau-Hyam and 32 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed, 3 pooled it
9.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 3 syntheses or guidelines pooled it, 183 citations in OpenAlex.

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23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 14 institutions in 7 countries.

Michael R JohnsonDivision of Brain Sciences, Imperial College London, Hammersmith Hospital Campus, Burlington Danes Building, London W12 0NN, UK.
Jacques Behmoaras *Centre for Complement and Inflammation Research, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Leonardo Bottolo *Department of Mathematics, Imperial College London, 180 Queen's Gate, London SW7 2AZ, UK.
Michelle L Krishnan *Centre for the Developing Brain, Department of Perinatal Imaging and Health, St Thomas' Hospital, King's College London, London SE1 7EH, UK.
Katharina Pernhorst *Section of Translational Epileptology, Department of Neuropathology, University of Bonn, Sigmund Freud Street 25, Bonn D-53127, Germany.
Paola L Meza Santoscoy *Department of Biomedical Science, Bateson Centre, University of Sheffield, Firth Court, Western Bank, Sheffield S10 2TN, UK.
Tiziana RossettiMedical Research Council (MRC) Clinical Sciences Centre, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Doug SpeedUCL Genetics Institute, University College London, Gower Street, London WC1E 6BT, UK.
Prashant K SrivastavaDivision of Brain Sciences, Imperial College London, Hammersmith Hospital Campus, Burlington Danes Building, London W12 0NN, UK.
Marc Chadeau-HyamDepartment of Epidemiology and Biostatistics, School of Public Health, MRC/PHE Centre for Environment and Health, Imperial College London, St Mary's Hospital, Norfolk Place, W21PG London, UK.
Nabil HajjiDepartment of Medicine, Centre for Pharmacology and Therapeutics, Imperial College London, Du Cane Road, London W12 0NN, UK.
Aleksandra DabrowskaDepartment of Medicine, Centre for Pharmacology and Therapeutics, Imperial College London, Du Cane Road, London W12 0NN, UK.
Maxime RotivalMedical Research Council (MRC) Clinical Sciences Centre, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Banafsheh RazzaghiMedical Research Council (MRC) Clinical Sciences Centre, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Stjepana KovacInstitute of Neurology, University College London, London WC1N 3BG, UK.
Klaus WanischInstitute of Neurology, University College London, London WC1N 3BG, UK.
Federico W GrilloMedical Research Council (MRC) Clinical Sciences Centre, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Anna SlavieroMedical Research Council (MRC) Clinical Sciences Centre, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Sarah R LangleyDivision of Brain Sciences, Imperial College London, Hammersmith Hospital Campus, Burlington Danes Building, London W12 0NN, UK.
Kirill ShkuraDivision of Brain Sciences, Imperial College London, Hammersmith Hospital Campus, Burlington Danes Building, London W12 0NN, UK.
Paolo RonconDepartment of Medical Sciences, Section of Pharmacology and Neuroscience Center, University of Ferrara, 44121 Ferrara, Italy.
Tisham DeMedical Research Council (MRC) Clinical Sciences Centre, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Manuel MattheisenDepartment of Genomics, Life and Brain Center, University of Bonn, D-53127 Bonn, Germany.
Pitt NiehusmannSection of Translational Epileptology, Department of Neuropathology, University of Bonn, Sigmund Freud Street 25, Bonn D-53127, Germany.
Terence J O'BrienDepartment of Medicine, RMH, University of Melbourne, Royal Melbourne Hospital, Royal Parade, Parkville, Victoria 3050, Australia.
Slave PetrovskiDepartment of Neurology, Royal Melbourne Hospital, Melbourne, Parkville, Victoria 3050, Australia.
Marec von LeheDepartment of Neurosurgery, University of Bonn Medical Center, Sigmund-Freud-Strasse 25, 53105 Bonn, Germany.
Per HoffmannInstitute of Human Genetics, University of Bonn, Sigmund-Freud-Strasse 25, 53127 Bonn, Germany.
Johan ErikssonFolkhälsan Research Centre, Topeliusgatan 20, 00250 Helsinki, Finland.
Alison J CoffeyWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton CB10 1SA, UK.
Sven CichonInstitute of Human Genetics, University of Bonn, Sigmund-Freud-Strasse 25, 53127 Bonn, Germany.
Matthew WalkerInstitute of Neurology, University College London, London WC1N 3BG, UK.
Michele SimonatoDepartment of Medical Sciences, Section of Pharmacology and Neuroscience Center, University of Ferrara, 44121 Ferrara, Italy.
Bénédicte DanisNeuroscience TA, UCB Biopharma SPRL, Avenue de l'industrie, R9, B-1420 Braine l'Alleud, Belgium.
Manuela MazzuferiNeuroscience TA, UCB Biopharma SPRL, Avenue de l'industrie, R9, B-1420 Braine l'Alleud, Belgium.
Patrik FoerchNeuroscience TA, UCB Biopharma SPRL, Avenue de l'industrie, R9, B-1420 Braine l'Alleud, Belgium.
Susanne SchochSection of Translational Epileptology, Department of Neuropathology, University of Bonn, Sigmund Freud Street 25, Bonn D-53127, Germany.
Vincenzo De PaolaMedical Research Council (MRC) Clinical Sciences Centre, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Rafal M KaminskiNeuroscience TA, UCB Biopharma SPRL, Avenue de l'industrie, R9, B-1420 Braine l'Alleud, Belgium.
Vincent T CunliffeDepartment of Biomedical Science, Bateson Centre, University of Sheffield, Firth Court, Western Bank, Sheffield S10 2TN, UK.
Albert J BeckerSection of Translational Epileptology, Department of Neuropathology, University of Bonn, Sigmund Freud Street 25, Bonn D-53127, Germany.
Enrico PetrettoMedical Research Council (MRC) Clinical Sciences Centre, Imperial College London, Hammersmith Hospital, Du Cane Road, London W12 0NN, UK.
Imperial College London · GBUniversity of Bonn · DEHammersmith Hospital · GBUCB Pharma (Belgium) · BEUniversity College London · GBMedical Research Council · GBUniversity of Ferrara · ITUniversity of Sheffield · GBFolkhälsans Forskningscentrum · FIKing's College London · GBSt Mary's Hospital · GBThe Royal Melbourne Hospital · AUUniversity of Melbourne · AUWellcome Sanger Institute · GB

Funding

Medical Research Council MC_U120088464Medical Research Council MC_U120097112Medical Research Council MR/L001578/1Medical Research Council MR/L012561/1Medical Research Council MR/M004716/1Wellcome Trust 079643Wellcome Trust WT066056
6 · The paper itself

Abstract

Gene-regulatory network analysis is a powerful approach to elucidate the molecular processes and pathways underlying complex disease. Here we employ systems genetics approaches to characterize the genetic regulation of pathophysiological pathways in human temporal lobe epilepsy (TLE). Using surgically acquired hippocampi from 129 TLE patients, we identify a gene-regulatory network genetically associated with epilepsy that contains a specialized, highly expressed transcriptional module encoding proconvulsive cytokines and Toll-like receptor signalling genes. RNA sequencing analysis in a mouse model of TLE using 100 epileptic and 100 control hippocampi shows the proconvulsive module is preserved across-species, specific to the epileptic hippocampus and upregulated in chronic epilepsy. In the TLE patients, we map the trans-acting genetic control of this proconvulsive module to Sestrin 3 (SESN3), and demonstrate that SESN3 positively regulates the module in macrophages, microglia and neurons. Morpholino-mediated Sesn3 knockdown in zebrafish confirms the regulation of the transcriptional module, and attenuates chemically induced behavioural seizures in vivo.

Indexed as

Gene Regulatory NetworksAdolescentAdultAnimalsChildChild, PreschoolEpilepsy, Temporal LobeFemaleHeat-Shock ProteinsHippocampusHumansInfantInflammationMacrophagesMaleMiceHeat-Shock ProteinsPentylenetetrazoleSESN3 protein, humanSestrins

Identifiers

PMID25615886
PMCPMC4627576
OpenAlexW1980429694

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.