Evidence map›Paper›PMID 25615866›Full record

ArticleActa crystallographica. Section D, Biological crystallography2015

Collaborative computational project for electron cryo-microscopy.

Chris Wood, Tom Burnley, Ardan Patwardhan, Sjors Scheres, Maya Topf, Alan Roseman, Martyn Winn

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
6.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
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  19. X-Ray Crystallography for Macromolecular Complexes.Advances in experimental medicine and biology · 2024
    Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 6 institutions in 1 country.

Chris WoodScientific Computing Department, Science and Technology Facilities Council, Research Complex at Harwell, Didcot OX11 0FA, England.
Tom BurnleyScientific Computing Department, Science and Technology Facilities Council, Research Complex at Harwell, Didcot OX11 0FA, England.
Ardan PatwardhanEuropean Bioinformatics Institute, European Molecular Biology Laboratory, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, England.
Sjors ScheresMRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge CB2 0QH, England.
Maya TopfBiological Sciences at Birkbeck, University of London, Malet Street, London WC1E 7HX, England.
Alan RosemanFaculty of Life Sciences, University of Manchester, Oxford Road, Manchester M13 9PT, England.
Martyn WinnScientific Computing Department, Science and Technology Facilities Council, Daresbury Laboratory, Warrington WA4 4AD, England.
Science and Technology Facilities Council · GBBirkbeck, University of London · GBEuropean Bioinformatics Institute · GBMRC Laboratory of Molecular Biology · GBResearch Complex at Harwell · GBUniversity of Manchester · GB

Funding

Unified Data Resource for Large Complexes Determined by Cryo-Electron MicroscopyR01GM079429 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2007 to 2021
$11.6M
Biotechnology and Biological Sciences Research Council BB/G022577/1Medical Research Council G0600084Medical Research Council MC_UP_A025_1013Medical Research Council MR/J000825/1Medical Research Council MR/L007835/1NIGMS NIH HHS R01 GM079429
6 · The paper itself

Abstract

The Collaborative Computational Project for Electron cryo-Microscopy (CCP-EM) has recently been established. The aims of the project are threefold: to build a coherent cryoEM community which will provide support for individual scientists and will act as a focal point for liaising with other communities, to support practising scientists in their use of cryoEM software and finally to support software developers in producing and disseminating robust and user-friendly programs. The project is closely modelled on CCP4 for macromolecular crystallography, and areas of common interest such as model fitting, underlying software libraries and tools for building program packages are being exploited. Nevertheless, cryoEM includes a number of techniques covering a large range of resolutions and a distinct project is required. In this article, progress so far is reported and future plans are discussed.

Indexed as

Cooperative BehaviorCryoelectron MicroscopyCCP-EMCollaborative Computational Project for Electron cryo-Microscopy

Identifiers

PMID25615866
PMCPMC4304692
OpenAlexW2126529674

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.