Evidence map›Paper›PMID 25615864›Full record

ArticleActa crystallographica. Section D, Biological crystallography2015

Acoustic transfer of protein crystals from agarose pedestals to micromeshes for high-throughput screening.

Christina M Cuttitta, Daniel L Ericson, Alexander Scalia, Christian G Roessler, Ella Teplitsky, Karan Joshi, Olven Campos, Rakhi Agarwal, Marc Allaire, Allen M Orville and 2 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Serial crystallography with multi-stage merging of thousands of images.Acta crystallographica. Section F, Structural biology communications · 2022
    Article
  2. Article
  3. Article
  4. Strategies for sample delivery for femtosecond crystallography.Acta crystallographica. Section D, Structural biology · 2019
    Review
  5. Using sound pulses to solve the crystal-harvesting bottleneck.Acta crystallographica. Section D, Structural biology · 2018
    Article
  6. Gentle, fast and effective crystal soaking by acoustic dispensing.Acta crystallographica. Section D, Structural biology · 2017
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Christina M CuttittaOffice of Educational Programs, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Daniel L EricsonOffice of Educational Programs, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Alexander ScaliaOffice of Educational Programs, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Christian G RoesslerPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Ella TeplitskyOffice of Educational Programs, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Karan JoshiOffice of Educational Programs, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Olven CamposOffice of Educational Programs, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Rakhi AgarwalBiosciences Department, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Marc AllairePhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Allen M OrvillePhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Robert M SweetPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.
Alexei S SoaresPhoton Sciences Directorate, Brookhaven National Laboratory, Upton, NY 11973-5000, USA.

Funding

X-RAY STRUCTURE OF RIFM PROTEIN FROM THE BIOSYNTHESIS PATHWAY OF THE ANSAMYCIN AP41RR012408 · NCRR · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MARIUZZA, ROY A · 1998 to 2011
$32.2M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
NCRR NIH HHS P41 RR012408NCRR NIH HHS P41RR012408NIBIB NIH HHS P30 EB009998NIGMS NIH HHS P41 GM103473NIGMS NIH HHS P41GM103473NIGMS NIH HHS P41 GM111244
6 · The paper itself

Abstract

Acoustic droplet ejection (ADE) is an emerging technology with broad applications in serial crystallography such as growing, improving and manipulating protein crystals. One application of this technology is to gently transfer crystals onto MiTeGen micromeshes with minimal solvent. Once mounted on a micromesh, each crystal can be combined with different chemicals such as crystal-improving additives or a fragment library. Acoustic crystal mounting is fast (2.33 transfers s(-1)) and all transfers occur in a sealed environment that is in vapor equilibrium with the mother liquor. Here, a system is presented to retain crystals near the ejection point and away from the inaccessible dead volume at the bottom of the well by placing the crystals on a concave agarose pedestal (CAP) with the same chemical composition as the crystal mother liquor. The bowl-shaped CAP is impenetrable to crystals. Consequently, gravity will gently move the crystals into the optimal location for acoustic ejection. It is demonstrated that an agarose pedestal of this type is compatible with most commercially available crystallization conditions and that protein crystals are readily transferred from the agarose pedestal onto micromeshes with no loss in diffraction quality. It is also shown that crystals can be grown directly on CAPs, which avoids the need to transfer the crystals from the hanging drop to a CAP. This technology has been used to combine thermolysin and lysozyme crystals with an assortment of anomalously scattering heavy atoms. The results point towards a fast nanolitre method for crystal mounting and high-throughput screening.

Indexed as

AcousticsCrystallizationHigh-Throughput Screening AssaysHydrogelsProteinsSepharoseHydrogelsProteinsSepharoseacoustic droplet ejectionchemical biologycrystal mountingdrug discoveryhigh-throughput screeningmacromolecular crystallography

Identifiers

PMID25615864
PMCPMC4304690

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.