Evidence map›Paper›PMID 25615415›Full record

ArticleNature communications2015

Site- and allele-specific polycomb dysregulation in T-cell leukaemia.

Jean-Marc Navarro, Aurore Touzart, Lydie C Pradel, Marie Loosveld, Myriam Koubi, Romain Fenouil, Sandrine Le Noir, Muhammad Ahmad Maqbool, Ester Morgado, Claude Gregoire and 18 more

Abstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. The Clinicogenomic Landscape of Induction Failure in Childhood and Young Adult T-Cell Acute Lymphoblastic Leukemia.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. The Genetics and Mechanisms of T-Cell Acute Lymphoblastic Leukemia.Cold Spring Harbor perspectives in medicine · 2020
    Review
  11. Epigenetic Control of a Local Chromatin Landscape.International journal of molecular sciences · 2020
    Review
  12. The role of noncoding mutations in blood cancers.Disease models & mechanisms · 2019
    Review
  13. Article
  14. Review
  15. Review
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Jean-Marc Navarro1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Aurore TouzartUniversité Paris Descartes Sorbonne Cité, Institut Necker-Enfants Malades (INEM), Institut national de recherche médicale (INSERM) U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris (AP-HP), Hôpital Necker Enfants-Malades, 75015 Paris, France.
Lydie C Pradel1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Marie Loosveld1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France [4] Laboratoire Hématologie, APHM, 13385 Marseille, France.
Myriam KoubiCRCM Inserm U1068, Institut Paoli Calmettes; Aix-Marseille Université, UM 105; CNRS UMR7258, 13009 Marseille, France.
Romain Fenouil1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Sandrine Le NoirUniversité Paris Descartes Sorbonne Cité, Institut Necker-Enfants Malades (INEM), Institut national de recherche médicale (INSERM) U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris (AP-HP), Hôpital Necker Enfants-Malades, 75015 Paris, France.
Muhammad Ahmad Maqbool1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Ester Morgado1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Claude Gregoire1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Sebastien Jaeger1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Emilie Mamessier1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Charles Pignon1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Salima Hacein-Bey-AbinaBiotherapy Department, INSERM U429, Hôpital Necker-Enfants-Malades, 149 rue de Sèvres, 75015 Paris, France.
Bernard Malissen1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Marta GutCentro Nacional de Análisis Genómico, 08028 Barcelona, Spain.
Ivo G GutCentro Nacional de Análisis Genómico, 08028 Barcelona, Spain.
Hervé DombretDepartment of Hematology, AP-HP Hôpital St-Louis, 75010 Paris, France.
Elizabeth A MacintyreUniversité Paris Descartes Sorbonne Cité, Institut Necker-Enfants Malades (INEM), Institut national de recherche médicale (INSERM) U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris (AP-HP), Hôpital Necker Enfants-Malades, 75015 Paris, France.
Steven J HoweCentre for Immunodeficiency, Molecular and Cellular Immunology, Institute of Child Health, University College London, London WC1N 1EH, UK.
H Bobby GasparCentre for Immunodeficiency, Molecular and Cellular Immunology, Institute of Child Health, University College London, London WC1N 1EH, UK.
Adrian J ThrasherCentre for Immunodeficiency, Molecular and Cellular Immunology, Institute of Child Health, University College London, London WC1N 1EH, UK.
Norbert IfrahServices des Maladies du sang CHU and UMR Inserm U 892/CNRS 6299, 49933 Angers, France.
Dominique Payet-Bornet1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Estelle DuprezLaboratoire Hématologie, APHM, 13385 Marseille, France.
Jean-Christophe Andrau1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.
Vahid AsnafiUniversité Paris Descartes Sorbonne Cité, Institut Necker-Enfants Malades (INEM), Institut national de recherche médicale (INSERM) U1151, and Laboratory of Onco-Hematology, Assistance Publique-Hôpitaux de Paris (AP-HP), Hôpital Necker Enfants-Malades, 75015 Paris, France.
Bertrand Nadel1] Center of Immunology of Marseille Luminy, Aix-Marseille University, Parc Scientifique de Luminy case 906, 13288 Marseille, France [2] INSERM U1104, 13288 Marseille, France [3] CNRS UMR7280, 13288 Marseille, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

T-cell acute lymphoblastic leukaemias (T-ALL) are aggressive malignant proliferations characterized by high relapse rates and great genetic heterogeneity. TAL1 is amongst the most frequently deregulated oncogenes. Yet, over half of the TAL1(+) cases lack TAL1 lesions, suggesting unrecognized (epi)genetic deregulation mechanisms. Here we show that TAL1 is normally silenced in the T-cell lineage, and that the polycomb H3K27me3-repressive mark is focally diminished in TAL1(+) T-ALLs. Sequencing reveals that >20% of monoallelic TAL1(+) patients without previously known alterations display microinsertions or RAG1/2-mediated episomal reintegration in a single site 5' to TAL1. Using 'allelic-ChIP' and CrispR assays, we demonstrate that such insertions induce a selective switch from H3K27me3 to H3K27ac at the inserted but not the germline allele. We also show that, despite a considerable mechanistic diversity, the mode of oncogenic TAL1 activation, rather than expression levels, impact on clinical outcome. Altogether, these studies establish site-specific epigenetic desilencing as a mechanism of oncogenic activation.

Indexed as

AllelesGene Expression Regulation, LeukemicAcetylationAdultBase SequenceBasic Helix-Loop-Helix ProteinsChromatin ImmunoprecipitationDNA-Binding ProteinsEpigenesis, GeneticGenetic LociHistonesHomeodomain ProteinsHumansJurkat CellsMethylationMolecular Sequence DataBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsHistonesHomeodomain ProteinsNuclear ProteinsPolycomb-Group ProteinsProto-Oncogene ProteinsRAG-1 proteinRAG2 protein, humanTAL1 protein, humanT-Cell Acute Lymphocytic Leukemia Protein 1

Identifiers

PMID25615415
PMCPMC4317503

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.